Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_029995.1 Length=2748 Score E Sequences producing significant alignments: (Bits) Value seq19028 253 4e-64 >seq19028 Length=31091 Score = 253 bits (280), Expect = 4e-64 Identities = 388/545 (71%), Gaps = 26/545 (5%) Strand=Plus/Plus Query 1587 GGTTGT-TGATGGTGATGAATTCTGCATTCTTTATAGCCCAATCTTTTAATGCTGAATTT 1645 |||||| |||||||| |||||||||||| | | || ||||| ||||||| |||| Sbjct 13771 GGTTGTGTGATGGTGTAGAATTCTGCATTATGCAAAGACCAATTTTTTAATTTAATATTT 13830 Query 1646 TTATCTTCATTCAAGTACTCTTTATATGATGATGTTGGTCCTGGATTGCAAAGGAAGATA 1705 || || || | | | |||||||||| || || || || |||||||| | |||||| Sbjct 13831 TTTTCCTCCTCGAGGAACTCTTTATAGCTGGAAGTAGGACCAGGATTGCACAAGAAGATT 13890 Query 1706 GTTGGGATTCCACCTTTAATTTGAATTGGTTTCCCGTACTTTGTGTTGCTTTGCCAGTCC 1765 || || || ||||| || || | | || | ||||| ||| ||||| ||| | Sbjct 13891 GTCGGTATCCCACCCTTTATCTTTACAGGCCTTCCGTATTTTACCTTGCTGGACCAATTG 13950 Query 1766 CTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGATAGTGGGGATCGACGTCATCAATG 1825 |||||||||||||| || |||||||||||||||||||| || |||||||||| ||||||| Sbjct 13951 CTTTGGGCCCCCATAAACTCTTTAAAGTGCTTTAGATAATGCGGATCGACGTTATCAATG 14010 Query 1826 ACGTTATACCAAGCATCATTACTGTAT-ACTTTTGGGCTT-AGATCAAGATGTCCACACA 1883 | ||||||||| |||| ||| || || | |||| || | ||| | ||| || || | Sbjct 14011 ATGTTATACCAGGCATTATT--TGAATAAATTTTATTATTCAAATCTAAATGACCGCATA 14068 Query 1884 AATAATTGTGAGGTCCCAGTGATCTGGCCCACATTGTTTTACCCGTACGACTATCACCTT 1943 ||||| || ||||| | ||||| |||||| ||| || || || | | ||||| | Sbjct 14069 GGTAATTATGTGGTCCTAAAGATCTTGCCCACTCTGTCTTCCCTGTTCTAGACTCACCCT 14128 Query 1944 CAATTACTATACTTTTGGGTC-TCCATGGCCGCGCAGCGGCACTGACGACATTCTCGGCA 2002 |||| || ||||| ||||||| | ||||||||||||||||| ||||| || || Sbjct 14129 CAATGACAATACTCTTGGGTCGTTAATGGCCGCGCAGCGGCATCCCTAACATTTTCAGCT 14188 Query 2003 GCCCATTTCTCAAGTTCTTCTGGAACTTGATCGAAAGAAGAAGATAAAAAAGGACAAACA 2062 ||||| ||||| ||| | ||| |||||| | |||||||| |||| Sbjct 14189 GCCCAGCACTCAA-------------TTG-TTGAAGGAAGAACAACTAAAAGGACTAACA 14234 Query 2063 AAAACCTCTATAGGA-GGGGCA--AAAATCCTATCTAAATTAGAATTTAAATTATGATAT 2119 || || |||| |||||| || || | |||||| || | | || |||||||||| Sbjct 14235 TAAGGTTC---AGGAGGGGGCATGAATATTCGATCTAATTTTGGAACTATATTATGATAT 14291 Query 2120 TGTAA 2124 || || Sbjct 14292 TGAAA 14296 Score = 221 bits (244), Expect = 2e-54 Identities = 319/439 (73%), Gaps = 11/439 (3%) Strand=Plus/Plus Query 953 GAATCATTCTGAGAATGCGTTAATGTTGTATATGGCATGTACTCATGCCTCTAACCCAGT 1012 || |||| |||| ||||| || ||||||||| | |||||||| ||||| || || Sbjct 13080 GACTCATACTGAAAATGCATT---GTTGTATATTAGTTCAACTCATGCATCTAATCCTGT 13136 Query 1013 GTATGCTACTTTGAAGATCA-GAATCTATTTCTATGATTCTGTAACAAATTAATAAAGAT 1071 ||| |||| ||| || || | | ||||| ||||| |||| |||||||||||| || Sbjct 13137 ATATTGTACTATGA-GAACACGCAGTTATTTTTATGAGAGTGTATCAAATTAATAAATAT 13195 Query 1072 TGAATTTTATTATATGAGAATGTGTTACATATTCTGTGTTTTGCAATACATCCCATAATA 1131 ||||||||||| |||| | | ||||| |||| | | | ||||| |||||| Sbjct 13196 TGAATTTTATTTCATGATATTCAAGTACATCCACTGTTTGCTCAATTACATTGAATAATA 13255 Query 1132 CA-TGATTACACGCTCTAATTACATTGTTAATACTAATTACACCCAAATTATCTAAATAT 1190 || || |||| |||||||| | ||||||||||||||| ||||| || |||||| || Sbjct 13256 CATTGTCTACA-GCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAAAAAT 13314 Query 1191 TTCA-TACATTGAACCCTAAATACTCTTAAGAAATGCCAAGTCTGAGGACGTAAACGAGT 1249 |||| |||| ||| ||||||||||||||||| | ||| |||||||||||||||| Sbjct 13315 TTCATTACA-CGAAATTTAAATACTCTTAAGAAAACGTATGTCGGAGGACGTAAACGAGT 13373 Query 1250 CCAGATCTGGAAGATTAGAAAACACTGGTGTATTCCCAACGCTTTCCTCAGGTTGTGGTT 1309 || ||||| |||| | || ||| | ||| | || | ||||||||||||||||| Sbjct 13374 CCTGATCTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTTGTGGTT 13433 Query 1310 GAATTGTATTTGGATCGTTATGATGTC-GTGGTTGGTGTTGAATGGTCTCTCGTGGTGCT 1368 |||| | ||||| || || ||||| || || | ||| |||||| | ||| | Sbjct 13434 GAATCGAATTTGTATTTCGATTATGTCGGTTGTCGAATTTG-TTGGTCTGAGATTGTGGT 13492 Query 1369 TGGTTATCTTGAAATATAG 1387 || |||||||||||||| Sbjct 13493 TGAGGATCTTGAAATATAG 13511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8681674335052