Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_030310.1 Length=2766 Score E Sequences producing significant alignments: (Bits) Value seq19028 288 2e-74 >seq19028 Length=31091 Score = 288 bits (318), Expect = 2e-74 Identities = 585/864 (68%), Gaps = 25/864 (3%) Strand=Plus/Plus Query 1613 GAGGGTGACGAATTTTGCATTTGGAATTGTCCAAGCTTTCAATGATGCATTCTTTTCCTC 1672 || |||| ||||| |||||| | | | |||| ||| ||| ||| |||||||| Sbjct 13779 GATGGTGTAGAATTCTGCATTATGCAAAGACCAATTTTTTAATTTAATATTTTTTTCCTC 13838 Query 1673 GTCTAGGAATTCTTTATAGGAGGACGTTGGTCCAGGATTGCAGAGGAAGATAGTGGGAAT 1732 || ||||| ||||||||| ||| || || ||||||||||| | |||||| || || || Sbjct 13839 CTCGAGGAACTCTTTATAGCTGGAAGTAGGACCAGGATTGCACAAGAAGATTGTCGGTAT 13898 Query 1733 GCCACCTTTAATTTGAATTGGCTTTCCGTACTTGGTATTGCTTTGCCAGTCACGCTGGGC 1792 ||||| || || | | ||| ||||||| || ||||| ||| | | ||||| Sbjct 13899 CCCACCCTTTATCTTTACAGGCCTTCCGTATTTTACCTTGCTGGACCAATTGCTTTGGGC 13958 Query 1793 CCCCATGAACTCTTTAAAGTGCTTTAGGTAGTGCGGATCGACGTCATCAATGACGTTATA 1852 |||||| |||||||||||||||||||| || ||||||||||||| |||||||| |||||| Sbjct 13959 CCCCATAAACTCTTTAAAGTGCTTTAGATAATGCGGATCGACGTTATCAATGATGTTATA 14018 Query 1853 CCAGGCATCATTGGAATACACCTTTGGGCTGAGATCGAGATGCCCACACAGATAATTGTG 1912 |||||||| ||| ||||| | || | | ||| | ||| || || || ||||| || Sbjct 14019 CCAGGCATTATTTGAATAAATTTTATTATTCAAATCTAAATGACCGCATAGGTAATTATG 14078 Query 1913 TGGTCCCAAAGACCGGGCCCACATTGTCTTCCCGGTCCGACTGTCTCCTTCGATGACAAT 1972 |||||| ||||| | |||||| ||||||||| || | | || || || |||||||| Sbjct 14079 TGGTCCTAAAGATCTTGCCCACTCTGTCTTCCCTGTTCTAGACTCACCCTCAATGACAAT 14138 Query 1973 ACTGATCGGTC-TCCATGGCCGCGCAGCGGAACTCTTTACATTTTCCGACGCCCAATTAT 2031 ||| | |||| | ||||||||||||||| | | | |||||||| | ||||| | Sbjct 14139 ACTCTTGGGTCGTTAATGGCCGCGCAGCGGCATCCCTAACATTTTCAGCTGCCCAGCACT 14198 Query 2032 CAA--GTTCCACCGGAACTCTCGAGAAAGAAGAAGAAAGAAATGGAGAAACATAAGGAGC 2089 ||| ||| ||| |||||| || ||| ||| ||||||||| | Sbjct 14199 CAATTGTT----------------GAAGGAAGAACAACTAAAAGGACTAACATAAGGTTC 14242 Query 2090 CGGTGGCTCTACAAAAATCTTATCTAAATTACAATTTATATTATGAAAATGTAAAACAAA 2149 || || | || || |||||| || | |||||||||| | || || | ||| Sbjct 14243 AGGAGGGGGCATGAATATTCGATCTAATTTTGGAACTATATTATGATATTGAAATAGAAA 14302 Query 2150 GTCTTTTGGGGCTAATTCTTTAATTATGCCAAGAGCTTC--CGACTTACTTCCCGAGTTA 2207 | | ||| | |||| |||| || ||| ||||| | | | | | | | ||| Sbjct 14303 CTTTGCTGGCATTTTTTCTCTAATAATAGAAAGCGCTTCTTCAATTGATGTAGC-ACTTA 14361 Query 2208 ATTGCTCTGGCGTAAGCGTCATTTGCAGACTCTTGACCTCCTCTTGCAGATCGCCCATCG 2267 | ||| || | | ||||||| | | | ||||||||| |||||||| |||||| Sbjct 14362 A-CGCTTCTGCAGATACATCATTTGTTGTATGTGAACCTCCTCTAGCAGATCGTCCATCG 14420 Query 2268 ATCTGAAACTGTCCCCATTCGAGGGTGTCTCCGTCTTTGTCCAGGTACGACTTGACGTCC 2327 || ||||| | ||||| ||| | || | |||||| | | ||| ||| || || Sbjct 14421 ATTTGAAAATTGCCCCAGTCGGTGTAATCACAGTCTTTCGCGATGTATTTCTTAACATCT 14480 Query 2328 GAGCTTGATTTAGCTCCCTGAATGTTGGGGTGGAAACTGGCGCTACTGCTTGGGTGTACA 2387 || ||||||||| || | ||| |||||| | ||| |||| | | || || | Sbjct 14481 GAAGATGATTTAGCGGATTGGAAGTTTGGGTGGTATGTGGTGCTAGTATTAGGATGGATG 14540 Query 2388 CAATCGAAGAGGCGATTGTTGGTACA-TGTGAGTTTGCCCTCGAACTGCAACAGCACATG 2446 ||||||| | | | ||| || | |||| ||||| ||||| || | || |||| Sbjct 14541 ATATCGAAGTGTCTAGGGTTTCTAAATTGTG-CCTTGCCTTCGAATTGAATAAGGGCATG 14599 Query 2447 AAGATGCGGTTCCCCATCTTGATG 2470 ||| ||||||||| || || Sbjct 14600 GCTATGAAATTCCCCATCCTGGTG 14623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8735962249295