Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_030749.1 Length=2740 Score E Sequences producing significant alignments: (Bits) Value seq19028 212 1e-51 >seq19028 Length=31091 Score = 212 bits (234), Expect = 1e-51 Identities = 278/380 (73%), Gaps = 5/380 (1%) Strand=Plus/Plus Query 1595 GCATTCTTGAGAGTCCAGTTCTTTAGTGCGGTGTTCTTCTCCTCGTCGAGGAATTCTTTA 1654 ||||| | | || ||| || |||| | | || || ||||| |||||||| |||||| Sbjct 13795 GCATTATGCAAAGACCAATTTTTTAATTTAATATTTTTTTCCTCCTCGAGGAACTCTTTA 13854 Query 1655 TAACTGCTGTTGGGGCCAGGATTGCACAGGAAGATTGTCGGTATTCCGCCTTTAATTTGA 1714 || ||| | || ||||||||||||| ||||||||||||||| || || || || | Sbjct 13855 TAGCTGGAAGTAGGACCAGGATTGCACAAGAAGATTGTCGGTATCCCACCCTTTATCTTT 13914 Query 1715 ACTGGCTTTCCGTATTTCGTA-TTTGATTG-CCAGTCCCGTTGGGCCCCCATGAATTCTT 1772 || ||| |||||||||| || ||| | | ||| | | |||||||||||| || |||| Sbjct 13915 ACAGGCCTTCCGTATTT--TACCTTGCTGGACCAATTGCTTTGGGCCCCCATAAACTCTT 13972 Query 1773 TAAAGTGTTTGAGGAAGTGGGGATCTACGTCATCAATGACGTTGTACCAAGCATCGTTGC 1832 ||||||| || || | || ||||| |||| |||||||| ||| ||||| |||| || Sbjct 13973 TAAAGTGCTTTAGATAATGCGGATCGACGTTATCAATGATGTTATACCAGGCATTATTTG 14032 Query 1833 TGTAGACCTTTGGGCTTAGATCCAAATGGCCACATAGATAGTTGTGTGGGCCTAGAGACC 1892 || | || | | ||| ||||| || ||||| || || ||||| |||| ||| | Sbjct 14033 AATAAATTTTATTATTCAAATCTAAATGACCGCATAGGTAATTATGTGGTCCTAAAGATC 14092 Query 1893 TAGCCCACATCGTCTTCCCGGTACGACTGTCTCCCTCAATCACTATACTCATTGGTC-TT 1951 | |||||| |||||||| || | | || |||||||| || |||||| | |||| || Sbjct 14093 TTGCCCACTCTGTCTTCCCTGTTCTAGACTCACCCTCAATGACAATACTCTTGGGTCGTT 14152 Query 1952 AGGGGCCGCGCAGCGGCGTC 1971 | |||||||||||||| || Sbjct 14153 AATGGCCGCGCAGCGGCATC 14172 Score = 145 bits (160), Expect = 1e-31 Identities = 297/437 (68%), Gaps = 7/437 (2%) Strand=Plus/Plus Query 941 GAATCACACTGAGAATGCTTTGTTGTTGTATATGGCATGTACTCATGCCTCTAATCCTGT 1000 || ||| ||||| ||||| |||| ||||||| | |||||||| ||||||||||| Sbjct 13080 GACTCATACTGAAAATGCATTGT---TGTATATTAGTTCAACTCATGCATCTAATCCTGT 13136 Query 1001 GTATGCTACTTTGAAAGTGAGGAGTTATTTTTATGACTCTGTCACGAATTAATAAAGATT 1060 ||| |||| ||| | | |||||||||||||| ||| | |||||||||| ||| Sbjct 13137 ATATTGTACTATGAGAACACGCAGTTATTTTTATGAGAGTGTATCAAATTAATAAATATT 13196 Query 1061 AAATTTTATTTC-TGA-ATTCATGTCTACATACATAGTTTGTTCTAtttttttCCATAAT 1118 ||||||||||| ||| ||||| | ||||| || ||||| || ||| || ||||| Sbjct 13197 GAATTTTATTTCATGATATTCAAG--TACATCCACTGTTTGCTCAATTACATTGAATAAT 13254 Query 1119 ACATGATCTATAGCCCTAATAATTGAATTAATGGAGATTACACCCAGATTGTTTAGATAT 1178 |||| |||| ||| |||||||| ||||| || ||||| | || || | || Sbjct 13255 ACATTGTCTACAGCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAAAAAT 13314 Query 1179 TTGAGGACTTGGGTTTTGAATACCCTTAAGAAAAGACCAGTCCGAGGGTGTAAGGTCGTC 1238 || | || | ||| ||||| |||||||||| ||| |||| |||| ||| Sbjct 13315 TTCATTACACGAAATTTAAATACTCTTAAGAAAACGTATGTCGGAGGACGTAAACGAGTC 13374 Query 1239 CATATTCGGTAGGTCAGAAAACACTTGTGCACTTCCAGAGCTCTCCGAAGGTTGTAGTTG 1298 | || | || | || ||| ||||| | | ||| | ||| ||||||| |||| Sbjct 13375 CTGATCTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTTGTGGTTG 13434 Query 1299 AATTGGATCCTGATTGTTATTATGTCCATGTTCATCGTGAATGGACGGTTGTCGTGGTTG 1358 ||| | || ||| |||||||| | || | ||| | | | ||||||| Sbjct 13435 AATCGAATTTGTATTTCGATTATGTCGGTTGTCGAATTTGTTGGTCTGAGATTGTGGTTG 13494 Query 1359 AGGATCTTGAAATAGAG 1375 |||||||||||||| || Sbjct 13495 AGGATCTTGAAATATAG 13511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8656083548508