Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_031452.1 Length=2636 Score E Sequences producing significant alignments: (Bits) Value seq19028 87.8 3e-14 >seq19028 Length=31091 Score = 87.8 bits (96), Expect = 3e-14 Identities = 258/394 (65%), Gaps = 14/394 (4%) Strand=Plus/Plus Query 1479 GAATTTCGCATTGTGAAGGGTCCAACTCTTTAATGCTGCGTTCTCTTCTTTGTCTAGGAA 1538 ||||| ||||| || | | |||| | |||||| || | ||| | || ||||| Sbjct 13788 GAATTCTGCATTATGCAAAGACCAATTTTTTAATTTAATATTTTTTTCCTCCTCGAGGAA 13847 Query 1539 ATCTTTATAGCTGGCCCCTTCACCAGGATTGCAAAGCACGATTGATGGGATGGATCCCGC 1598 ||||||||||||| |||||||||||| | | ||||| | | ||||| | Sbjct 13848 CTCTTTATAGCTGGAAGTAGGACCAGGATTGCACAAGAAGATTGTCG----GTATCCCAC 13903 Query 1599 CTTTAATTTGAACCGGCTTTCCGTATTTGCAGTTCGATTG--CCAGTCCTTTTGAGCCCA 1656 | || || | || ||| |||||||||| | | | | | | | | |||| | ||| Sbjct 13904 CCTTTATCTTTACAGGCCTTCCGTATTT-TACCTTGCTGGACCAATTGCTTTGGGCCCCC 13962 Query 1657 ATCAATTCTTTCCAGTGCTTTAGCTTTAGATAGAGCGGTGCGATGTCATCTATCACGTTG 1716 || || ||||| ||| |||||||||| |||| ||| || ||| || | ||| Sbjct 13963 ATAAACTCTTTAAAGT------GCTTTAGATAATGCGGATCGACGTTATCAATGATGTTA 14016 Query 1717 TATTGGGCCAAATTCGAATAGACCCTCGAATTGAAATCGAGGTGACCACTCAGGTAATTG 1776 || ||| ||| ||||| | | ||| ||||| | ||||| | |||||||| Sbjct 14017 TACCAGGCATTATTTGAATAAATTTTATTATTCAAATCTAAATGACCGCATAGGTAATTA 14076 Query 1777 TGGACCCCCAAGGCACGTGCCCACATGGTCTTCCCTGACCTTGAACCACCCTCTATGATG 1836 || || || | | ||||||| |||||||||| || || ||||||| |||| Sbjct 14077 TGTGGTCCTAAAGATCTTGCCCACTCTGTCTTCCCTGTTCTAGACTCACCCTCAATGACA 14136 Query 1837 ATGCTGAGTGGTC-TCTCCGGCCGCGCAGCGGCA 1869 || || |||| | ||||||||||||||| Sbjct 14137 ATACTCTTGGGTCGTTAATGGCCGCGCAGCGGCA 14170 Score = 80.6 bits (88), Expect = 4e-12 Identities = 83/109 (76%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 887 ACTCATGCCTCAAACCCTGTATATGCGACATTGAAAATTCGGATCTATTTCTATGATTCG 946 |||||||| || || ||||||||| || ||| || || | ||||| ||||| Sbjct 13117 ACTCATGCATCTAATCCTGTATATTGTACTATGAGAACACGCAGTTATTTTTATGAGAGT 13176 Query 947 ATATCCAATTAATAAAATTTGAATTTTATTTCATGATTCTCAAGCACAT 995 |||| |||||||||| ||||||||||||||||||| ||||| |||| Sbjct 13177 GTATCAAATTAATAAATATTGAATTTTATTTCATGATATTCAAGTACAT 13225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8323403323436