Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_031466.1 Length=2759 Score E Sequences producing significant alignments: (Bits) Value seq19028 288 2e-74 >seq19028 Length=31091 Score = 288 bits (318), Expect = 2e-74 Identities = 320/426 (75%), Gaps = 1/426 (0%) Strand=Plus/Plus Query 1584 AATGGTTGTGTGATGGTGATGAATTCTGCATTCTTTAATGACCAGTCTTTGAGTGCAGAA 1643 |||||||||||||||||| |||||||||||| | || ||||| | ||| | | | | Sbjct 13768 AATGGTTGTGTGATGGTGTAGAATTCTGCATTATGCAAAGACCAATTTTTTAATTTAATA 13827 Query 1644 TTTTTATCCTCATCCAAGTACTCTTTGTATGATGACGTTGGTCCTGGATTGCAGAGGAAG 1703 ||||| ||||| || | | ||||||| || || || || || |||||||| | |||| Sbjct 13828 TTTTTTTCCTCCTCGAGGAACTCTTTATAGCTGGAAGTAGGACCAGGATTGCACAAGAAG 13887 Query 1704 ATAGTGGGAATTCCACCTTTAATTTGAATGGGCTTCCCGTACTTTGTGTTGCTTTGCCAG 1763 || || || || ||||| || || | | ||| | ||||| ||| ||||| ||| Sbjct 13888 ATTGTCGGTATCCCACCCTTTATCTTTACAGGCCTTCCGTATTTTACCTTGCTGGACCAA 13947 Query 1764 TCCCTTTGTGCCCCCATAAATTCTTTAAAATGCTTTAGGTAGTGGGGGTCGACGTCATCA 1823 | ||||| ||||||||||| |||||||| |||||||| || || || ||||||| |||| Sbjct 13948 TTGCTTTGGGCCCCCATAAACTCTTTAAAGTGCTTTAGATAATGCGGATCGACGTTATCA 14007 Query 1824 ATGACGTTGTACCAGGCATCATTACTGTAGACTTTTGGGCTCAGGTCCAGATGTCCACAT 1883 |||| ||| |||||||||| ||| || | ||| ||| || | ||| || ||| Sbjct 14008 ATGATGTTATACCAGGCATTATTTGAATAAATTTTATTATTCAAATCTAAATGACCGCAT 14067 Query 1884 AAATAATTGTGTGGGCCTAAAGACCTGGCCCACATTGTCTTCCCTGTACGACTCTCGCCC 1943 | ||||| ||||| |||||||| || |||||| |||||||||||| | | ||| ||| Sbjct 14068 AGGTAATTATGTGGTCCTAAAGATCTTGCCCACTCTGTCTTCCCTGTTCTAGACTCACCC 14127 Query 1944 TCTATGACAATACTTTTAGGTC-TCCATGGCCGCGCAGCGGCACCAACAACATTCTCAGC 2002 || ||||||||||| || |||| | ||||||||||||||||| | |||||| ||||| Sbjct 14128 TCAATGACAATACTCTTGGGTCGTTAATGGCCGCGCAGCGGCATCCCTAACATTTTCAGC 14187 Query 2003 CGCCCA 2008 ||||| Sbjct 14188 TGCCCA 14193 Score = 224 bits (248), Expect = 2e-55 Identities = 281/382 (74%), Gaps = 5/382 (1%) Strand=Plus/Plus Query 958 CATACTGAAAATGCTTTGTTGTTGTATATGGCATGTACTCATGCCTCTAATCCTGTGTAT 1017 |||||||||||||| |||| ||||||| | |||||||| ||||||||||| ||| Sbjct 13084 CATACTGAAAATGCATTGT---TGTATATTAGTTCAACTCATGCATCTAATCCTGTATAT 13140 Query 1018 GCTACTTTGAAAGTCAGAAGTTATTTCTATGACTCAGTGACGAATTAATAAATATTAAAT 1077 |||| ||| | | |||||||| ||||| || | |||||||||||||| ||| Sbjct 13141 TGTACTATGAGAACACGCAGTTATTTTTATGAGAGTGTATCAAATTAATAAATATTGAAT 13200 Query 1078 TTTATATCGTGTTTTTCAATTACATCACTTGTTCCTTCTAATACATTGTACAGTACATGA 1137 ||||| || || | ||||| |||||| |||| || | ||||||| | | ||||| Sbjct 13201 TTTATTTCATGATATTCAAGTACATCCACTGTTTGCTCAATTACATTGAATAATACATTG 13260 Query 1138 GACATTGCCCTAATTACATTATTAATACTAATCACGCCTAATCTATCTAAATATTT-AAT 1196 | || ||||| | ||| ||||||||||| || ||||||| |||||| |||| | | Sbjct 13261 TCTACAGCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAAAAATTTCATT 13320 Query 1197 ACATTGATATTTAAATACTCTTAAGAAACGCCAAGTCTGAGGATGTAAATGAGTCCAGAT 1256 ||| || |||||||||||||||||||| | ||| ||||| ||||| |||||| ||| Sbjct 13321 ACA-CGAAATTTAAATACTCTTAAGAAAACGTATGTCGGAGGACGTAAACGAGTCCTGAT 13379 Query 1257 CTGGAAGTTCAGAAAACATTGATGCATCCCCAACGCTTTCCTCAGGTTGTGATTGAACCT 1316 || |||||| || ||| || || | || | |||||||||||||| ||||| | Sbjct 13380 CTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTTGTGGTTGAATCG 13439 Query 1317 GATCTGGATTGTTATTATGTCG 1338 || || ||| ||||||||| Sbjct 13440 AATTTGTATTTCGATTATGTCG 13461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8716861666550