Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_032118.1 Length=2791 Score E Sequences producing significant alignments: (Bits) Value seq19028 233 3e-58 >seq19028 Length=31091 Score = 233 bits (258), Expect = 3e-58 Identities = 462/682 (68%), Gaps = 19/682 (3%) Strand=Plus/Plus Query 1647 GAAGAGTGGTTCGGTGATGGTGTGGAACAACGCATTTTTTATAGCCCAGTATTTTAGTGC 1706 ||| | ||||| |||||||||| ||| ||||| | | || ||| | ||||| | Sbjct 13764 GAATAATGGTTGTGTGATGGTGTAGAATTCTGCATTATGCAAAGACCAATTTTTTAATTT 13823 Query 1707 GTTGtttttttCCTCGTCAAGGAACTCTTTATAGGACGACGTTGGGCCCGGATTGCACAG 1766 | ||||||||||| || ||||||||||||||| || || || || |||||||||| Sbjct 13824 AATATTTTTTTCCTCCTCGAGGAACTCTTTATAGCTGGAAGTAGGACCAGGATTGCACAA 13883 Query 1767 GAAGATTGTTGGGATCCCGCCTTTAATTTGAATTGGTTTCCCGTACTTCGTGTTGCTTTG 1826 ||||||||| || ||||| || || || | | || | ||||| || ||||| Sbjct 13884 GAAGATTGTCGGTATCCCACCCTTTATCTTTACAGGCCTTCCGTATTTTACCTTGCTGGA 13943 Query 1827 CCAGTCTCGTTGGGCCCCCATGAATTCCTTGAAATGTTTCAAATAATGAGGGTCAACATC 1886 ||| | | |||||||||||| || || || || || || | |||||| || || || | Sbjct 13944 CCAATTGCTTTGGGCCCCCATAAACTCTTTAAAGTGCTTTAGATAATGCGGATCGACGTT 14003 Query 1887 GTCAATGATATTAAACCAGGCATCATTTGAATATATTTTAGGGCTTAGATCCAGATGTCC 1946 |||||||| ||| ||||||||| ||||||||| |||||| | | ||| | ||| || Sbjct 14004 ATCAATGATGTTATACCAGGCATTATTTGAATAAATTTTATTATTCAAATCTAAATGACC 14063 Query 1947 ACATAAATAGTTATGAGGACCTAAGGAACGTGCCCATAATGTTTTTCCAGTACGTGAATC 2006 |||| || ||||| || ||||| || | |||||| ||| || || || | || || Sbjct 14064 GCATAGGTAATTATGTGGTCCTAAAGATCTTGCCCACTCTGTCTTCCCTGTTCTAGACTC 14123 Query 2007 ACCTTCTAATACTAAACT-TAAGGGCCTTATTGGCCGCGCAGCGGCAGCACATACGTTTT 2065 ||| || | || | ||| | || | ||| |||||||||||||||| | | || |||| Sbjct 14124 ACCCTCAATGACAATACTCTTGGGTCGTTAATGGCCGCGCAGCGGCATCCCTAACATTTT 14183 Query 2066 CAGAAGCCCATTCTTCCAGTGTATCTGGAACGTTATTAAACGAAGAAGATAAAAACGGAC 2125 ||| ||||| || | || || || |||||| | ||| |||| Sbjct 14184 CAGCTGCCCAGCACTCAA--------------TTGTTGAAGGAAGAACAACTAAAAGGAC 14229 Query 2126 TAATATATTGCTCCATAGGAGGAGCGAAAATCCTATCTAAATTAGCATTTAAATTATGAA 2185 ||| ||| | || ||| || ||| || | |||||| || | | || ||||||| Sbjct 14230 TAACATAAGGTTCAGGAGGGGGCATGAATATTCGATCTAATTTTGGAACTATATTATGAT 14289 Query 2186 ATTGTAAAACAAAATCTTTAGGAGC-CTTCTCCTTTAAT-ATATCGAGGGCCTGTGACTT 2243 |||| ||| | || |||| || || | || |||| ||| || || | | | Sbjct 14290 ATTG--AAATAGAAACTTTGCTGGCATTTTTTCTCTAATAATAGAAAGCGCTTCTTCAAT 14347 Query 2244 AGACCCTGAATTGAGTGCCTCGGCATATGCGTCGTTGGCATTCTGGCAACCTCCTCTAGC 2303 || | | | | || || ||| || | || || | | || ||||||||||||| Sbjct 14348 TGATGTAGCACTTAACGCTTCTGCAGATACATCATTTGTTGTATGTGAACCTCCTCTAGC 14407 Query 2304 AGATCGTCCATCGATCTGGAAA 2325 ||||||||||||||| || ||| Sbjct 14408 AGATCGTCCATCGATTTGAAAA 14429 Score = 163 bits (180), Expect = 5e-37 Identities = 259/371 (70%), Gaps = 9/371 (2%) Strand=Plus/Plus Query 1019 CATACGGAGAATGCTTTGTTGTTGTATATGGCATGTACTCATGCTTCAAATCCTGTGTAT 1078 ||||| || ||||| ||||||| |||| | |||||||| || |||||||| ||| Sbjct 13084 CATACTGAAAATGCATTGTTGT---ATATTAGTTCAACTCATGCATCTAATCCTGTATAT 13140 Query 1079 GCAAGTCTGAAAATACGAATGTACTTCTATGACAGTGTAACGAATTGAAATTAATAAAGA 1138 | | ||| || ||| | || || ||||| |||||| | ||||||||||| | Sbjct 13141 TGTACTATGAGAACACGCAGTTATTTTTATGAGAGTGTATC------AAATTAATAAATA 13194 Query 1139 TTGAATTTTATATCATAATTTGTGTCTACATGTACAGTTTGTTCCAATACATTCCATAAT 1198 ||||||||||| |||| || | ||||| || ||||| || | |||||| ||||| Sbjct 13195 TTGAATTTTATTTCATGATATTCAAGTACATCCACTGTTTGCTCAATTACATTGAATAAT 13254 Query 1199 ACATGATTGATAGCCCTAATTACAATGTTAATTGTGACTATTCCTGCTTGGTTGATGTAC 1258 |||| | | ||| ||||| | | ||||||| | | | ||| | ||| | | Sbjct 13255 ACATTGTCTACAGCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAAAAAT 13314 Query 1259 TTCATGATCTGTGTCTTGAACACTCTCAAGAAATGCAATGTCTGAGGCTGTAAACCAGTC 1318 ||||| | | || || ||||| |||||| ||||| |||| |||||| |||| Sbjct 13315 TTCATTACACGAAATTTAAATACTCTTAAGAAAACGTATGTCGGAGGACGTAAACGAGTC 13374 Query 1319 CAGATCTTCAAGTTGATAAAACACTTGTGAAGACCTAGAGCTTTCCGCAGGTTGTGGTTG 1378 | |||||| ||||||| ||| ||||||||| || | |||| ||||||||||||| Sbjct 13375 CTGATCTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTTGTGGTTG 13434 Query 1379 AATCTGATTTG 1389 |||| ||||| Sbjct 13435 AATCGAATTTG 13445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8815932610420