Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pennellii_20[refseq_20GCF_5F001406875.1_202014-07-11] 12 sequences; 926,426,464 total letters Query= NC_003287.2 Length=6407 Score E Sequences producing significant alignments: (Bits) Value seq10 764 0.0 >seq10 Length=82529941 Score = 764 bits (846), Expect = 0.0 Identities = 426/428 (99%), Gaps = 0/428 (0%) Strand=Plus/Plus Query 5488 ACGCGCCCTGTAGCGGCGCATTAAGCGCGGCGGGTGTGGTGGTTACGCGCAGCGTGACCG 5547 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 73332381 ACGCGCCCTGTAGCGGCGCATTAAGCGCGGCGGGTGTGGTGGTTACGCGCAGCGTGACCG 73332440 Query 5548 CTACACTTGCCAGCGCCCTAGCGCCCGCTCCTTTCGCTTTCTTCCCTTCCTTTCTCGCCA 5607 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 73332441 CTACACTTGCCAGCGCCCTAGCGCCCGCTCCTTTCGCTTTCTTCCCTTCCTTTCTCGCCA 73332500 Query 5608 CGTTCGCCGGCTTTCCCCGTCAAGCTCTAAATCGGGGGCTCCCTTTAGGGTTCCGATTTA 5667 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 73332501 CGTTCGCCGGCTTTCCCCGTCAAGCTCTAAATCGGGGGCTCCCTTTAGGGTTCCGATTTA 73332560 Query 5668 GTGCTTTACGGCACCTCGACCCCAAAAAACTTGATTTGGGTGATGGTTCACGTAGTGGGC 5727 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 73332561 GTGCTTTACGGCACCTCGACCCCAAAAAACTTGATTAGGGTGATGGTTCACGTAGTGGGC 73332620 Query 5728 CATCGCCCTGATAGACGGTTTTTCGCCCTTTGACGTTGGAGTCCACGTTCTTTAATAGTG 5787 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 73332621 CATCGCCCTGATAGACGGTTTTTCGCCCTTTGACGTTGGAGTCCACGTTCTTTAATAGTG 73332680 Query 5788 GACTCTTGTTCCAAACTGGAACAACACTCAACCCTATCTCGGGCTATTCTTTTGATTTAT 5847 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 73332681 GACTCTTGTTCCAAACTGGAACAACACTCAACCCTATCTCGGTCTATTCTTTTGATTTAT 73332740 Query 5848 AAGGGATTTTGCCGATTTCGGCCTATTGGttaaaaaatgagctgatttaacaaaaattta 5907 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 73332741 AAGGGATTTTGCCGATTTCGGCCTATTGGTTAAAAAATGAGCTGATTTAACAAAAATTTA 73332800 Query 5908 acgcgaat 5915 |||||||| Sbjct 73332801 ACGCGAAT 73332808 Score = 327 bits (362), Expect = 5e-86 Identities = 183/184 (99%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 2529 CGATGGTTTCATTGGTGACGTTTCCGGCCTTGCTAATGGTAATGGTGCTACTGGTGATTT 2588 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 73356435 CGATGGTTTCATTGGTGACGTTTCCGGCCTTGCTAATGGTAATGGTGCTACTGGTGATTT 73356494 Query 2589 TGCTGGCTCTAATTCCCAAATGGCTCAAGTCGGTGACGGTGATAATTCACCTTTAATGAA 2648 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 73356495 TGCTGGCTCTAATTCCCAAATGGCTCAAGTCGGTGACGGTGATAATTCACCTTTAATGAA 73356554 Query 2649 TAATTTCCGTCAATATTTACCTTCCCTCCCTCAATCGGTTGAATGTCGCCCTTTTGTCTT 2708 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 73356555 TAATTTCCGTCAATATTTACCTTCCCTCCCTCAATCGGTTGAATGTCGCCCTTTTGTCTT 73356614 Query 2709 TAGC 2712 | || Sbjct 73356615 TGGC 73356618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 20387197247728