Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pennellii_20[refseq_20GCF_5F001406875.1_202014-07-11] 12 sequences; 926,426,464 total letters Query= NC_025824.1 Length=6408 Score E Sequences producing significant alignments: (Bits) Value seq10 719 0.0 >seq10 Length=82529941 Score = 719 bits (796), Expect = 0.0 Identities = 433/456 (95%), Gaps = 0/456 (0%) Strand=Plus/Plus Query 5489 ACGCGCCCTGTAGCGGCGCATTAAGCGCGGCGGGTGTGGTGGTTACGCGCAGCGTGACCG 5548 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 73332381 ACGCGCCCTGTAGCGGCGCATTAAGCGCGGCGGGTGTGGTGGTTACGCGCAGCGTGACCG 73332440 Query 5549 CTACACTTGCCAGCGCCCTAGCGCCCGCTCCTTTCGCTTTCTTCCCTTCCTTTCTCGCCA 5608 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 73332441 CTACACTTGCCAGCGCCCTAGCGCCCGCTCCTTTCGCTTTCTTCCCTTCCTTTCTCGCCA 73332500 Query 5609 CGTTCTCCGGCTTTCCCCGTCAAGCTCTAAATCGGGGGATCCCTTTAGGGTTCCGATTTA 5668 ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 73332501 CGTTCGCCGGCTTTCCCCGTCAAGCTCTAAATCGGGGGCTCCCTTTAGGGTTCCGATTTA 73332560 Query 5669 GTGCTTTACGGCACCTCGACCTCCAAAAACTTGATTTGGGTGATGGTTCACGTAGTGGGC 5728 ||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||| Sbjct 73332561 GTGCTTTACGGCACCTCGACCCCAAAAAACTTGATTAGGGTGATGGTTCACGTAGTGGGC 73332620 Query 5729 CATCGCCCTGATAGACGGTTTTTCGCCCTTTGACGTTGGAGTCCACGTTCTTTAATAGTG 5788 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 73332621 CATCGCCCTGATAGACGGTTTTTCGCCCTTTGACGTTGGAGTCCACGTTCTTTAATAGTG 73332680 Query 5789 GACTCTTGTTCCAAACTGGAACAACACTCACAACTAACTCGGCCTATTCTTTTGATTTAT 5848 |||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||| Sbjct 73332681 GACTCTTGTTCCAAACTGGAACAACACTCAACCCTATCTCGGTCTATTCTTTTGATTTAT 73332740 Query 5849 AAGGATTTTTGTCATTTTCTGCTTACTGGTTAAAAAATAAGCTGATTTAACAAATATTTA 5908 |||| ||||| | |||| || || |||||||||||| ||||||||||||||| ||||| Sbjct 73332741 AAGGGATTTTGCCGATTTCGGCCTATTGGTTAAAAAATGAGCTGATTTAACAAAAATTTA 73332800 Query 5909 ACGCGAAATTTAACAAAACATTAACGTTTACAATTT 5944 ||||||| |||||||||| ||||||| ||||||||| Sbjct 73332801 ACGCGAATTTTAACAAAATATTAACGCTTACAATTT 73332836 Score = 309 bits (342), Expect = 1e-80 Identities = 179/184 (97%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 2529 CGATGGTTTCATTGGTGACGTTTCCGGCCTTGCTAATGGTAATGGTGCTACTGGTGATTT 2588 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 73356435 CGATGGTTTCATTGGTGACGTTTCCGGCCTTGCTAATGGTAATGGTGCTACTGGTGATTT 73356494 Query 2589 TGCTGGCTCTAATTCCCAAATGGCTCAAGTCGGTGACGGTGATAATTCACCTTTAATGAA 2648 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 73356495 TGCTGGCTCTAATTCCCAAATGGCTCAAGTCGGTGACGGTGATAATTCACCTTTAATGAA 73356554 Query 2649 TAATTTCCGTCAATATTTACCTTCTTTGCCTCAGTCGGTTGAATGTCGCCCTTATGTCTT 2708 |||||||||||||||||||||||| | ||||| ||||||||||||||||||| |||||| Sbjct 73356555 TAATTTCCGTCAATATTTACCTTCCCTCCCTCAATCGGTTGAATGTCGCCCTTTTGTCTT 73356614 Query 2709 TGGC 2712 |||| Sbjct 73356615 TGGC 73356618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 20390397247296