Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04]
200,203 sequences; 414,621,889 total letters
Query= NC_018151.1
Length=3640
Score E
Sequences producing significant alignments: (Bits) Value
seq43528 95.1 3e-16
seq27506 89.7 1e-14
seq82647 84.2 5e-13
seq42475 84.2 5e-13
seq39463 84.2 5e-13
seq155727 80.6 6e-12
seq124949 80.6 6e-12
seq36209 80.6 6e-12
seq22095 80.6 6e-12
seq155348 78.8 2e-11
seq69661 78.8 2e-11
seq142455 77.0 7e-11
>seq43528
Length=345
Score = 95.1 bits (104), Expect = 3e-16
Identities = 189/277 (68%), Gaps = 5/277 (2%)
Strand=Plus/Plus
Query 2402 ATTAACACATATTATGGACGGTATGCCTCCCTTAATAGTGCGATCGGGTCTATACTTAAT 2461
|||||| | || || |||||||| || || ||||| | || || | |||||||
Sbjct 57 ATTAACTAAGATAATAGACGGTATTCCGCCTTTAATTAATAGGTCTGGCTGAAACTTAAT 116
Query 2462 GTTAACGGTAATGtttttttGGGACCCCACTAAGGATT--TCATAACCTCATGTGAGATT 2519
| ||| | | | | ||||| | || |||| |||| |||| | ||| | || |
Sbjct 117 GAAGACGTTGAAATCTCTTTGGCAGCCAACTA--GATTCTTCATTAATTCAGTTTGGACT 174
Query 2520 TTGGTGTATTGGATGTCATCAATGACGTTATACAGTGCGTGGTCGTTGTAGTCGTGGAAT 2579
||| ||||| ||||||||| |||||||| || ||| | | || ||| || | |||
Sbjct 175 GTGGAGTATTTGATGTCATCGATGACGTTGTAGCATGCTTCTTGGTCGTAATCCTTGAAA 234
Query 2580 TTGATGGCACCCGTGAAGTAGTTGTGTAGGCCTAAACTTCTGGCCCAGGCGGTTTTGCCT 2639
| || || | ||||||||||||| | || | ||||||| ||||||||||||| ||
Sbjct 235 CTTATTCTGCCTGAGAAGTAGTTGTGTCGTCCGAGACTTCTGACCCAGGCGGTTTTTCCC 294
Query 2640 GATCGGCTTGGGCCGCAGATGTAGAGGGA-TTTGGGC 2675
| || || || || ||||||||| ||||||
Sbjct 295 GTTCTTGACGGTCCTTCGAGGTAGAGGGAGATTGGGC 331
>seq27506
Length=293
Score = 89.7 bits (98), Expect = 1e-14
Identities = 156/224 (70%), Gaps = 5/224 (2%)
Strand=Plus/Plus
Query 2455 ACTTAATGTTAACGGTAATGtttttttGGGACCCCACTAAGGATT--TCATAACCTCATG 2512
|||||||| ||| | | | | ||||| | || |||| |||| |||| | |||
Sbjct 28 ACTTAATGAAGACGTTGAAATCTCTTTGGCAGCCAACTA--GATTCTTCATTAATTCAGT 85
Query 2513 TGAGATTTTGGTGTATTGGATGTCATCAATGACGTTATACAGTGCGTGGTCGTTGTAGTC 2572
| || | ||| ||||| ||||||||| |||||||| || ||| | | || ||| ||
Sbjct 86 TTGGACTGTGGAGTATTTGATGTCATCGATGACGTTGTAGCATGCTTCTTGGTCGTAATC 145
Query 2573 GTGGAATTTGATGGCACCCGTGAAGTAGTTGTGTAGGCCTAAACTTCTGGCCCAGGCGGT 2632
| ||| | || || | ||||||||||||| | || | ||||||||||||||||||
Sbjct 146 CTTGAAACTTATTCTGCCTGAGAAGTAGTTGTGTCGTCCGAGACTTCTGGCCCAGGCGGT 205
Query 2633 TTTGCCTGATCGGCTTGGGCCGCAGATGTAGAGGGA-TTTGGGC 2675
||| || | || || || || ||||||||| ||||||
Sbjct 206 TTTTCCCGTTCTTGACGGTCCTTCGAGGTAGAGGGAGATTGGGC 249
>seq82647
Length=746
Score = 84.2 bits (92), Expect = 5e-13
Identities = 160/230 (70%), Gaps = 12/230 (5%)
Strand=Plus/Plus
Query 2479 tttGGGACCCCACTAAGGATT--TCATAACCTCATGTGAGATTTTGGTGTATTGGATGTC 2536
||||| | || |||| |||| |||| | ||| | || | ||| ||||| ||||||
Sbjct 12 TTTGGCAGCCAACTA--GATTCTTCATTAATTCAGTTTGGACTGTGGAGTATTTGATGTC 69
Query 2537 ATCAATGACGTTATACAGTGCGTGGTCGTTGTAGTCGTGGAATTTGATGGCACCCGTGAA 2596
||| |||||||| || ||| | | || ||| || | ||| | || ||| | |||
Sbjct 70 ATCGATGACGTTGTAACATGCTTTTTGGTCGTAATCCTTGAAACTTATTCTACCTGAGAA 129
Query 2597 GTAGTTGTGTAGGCCTAAACTTCTGGCCCAGGCGGTTTTGCCTGATCGGCTTG---GGCC 2653
|||||| ||| | || | |||||||||||| |||||||| || | | |||| | ||
Sbjct 130 GTAGTTATGTCGTCCGAGACTTCTGGCCCAAGCGGTTTTTCCAGTT---CTTGACAGTCC 186
Query 2654 GCAGATGTAGAGGGA-TTTGGGCCTGTCGGGCTTGGAGTCTGGTTCCTGT 2702
|| ||||||||| |||||| | | || | | ||||||||||||
Sbjct 187 TTCGAGGTAGAGGGAGATTGGGCGTATTGGTCGCTG-TTCTGGTTCCTGT 235
>seq42475
Length=339
Score = 84.2 bits (92), Expect = 5e-13
Identities = 113/156 (72%), Gaps = 1/156 (1%)
Strand=Plus/Minus
Query 2521 TGGTGTATTGGATGTCATCAATGACGTTATACAGTGCGTGGTCGTTGTAGTCGTGGAATT 2580
||| ||||| ||||||||| |||||||| || ||| | | || ||| || | |||
Sbjct 318 TGGAGTATTTGATGTCATCGATGACGTTGTAGCATGCTTCTTGGTCGTAATCCTTGAAAC 259
Query 2581 TGATGGCACCCGTGAAGTAGTTGTGTAGGCCTAAACTTCTGGCCCAGGCGGTTTTGCCTG 2640
| || || | ||||||||||||| | || | ||||||||||||||||||||| || |
Sbjct 258 TTATTCTGCCTGAGAAGTAGTTGTGTCGTCCGAGACTTCTGGCCCAGGCGGTTTTTCCCG 199
Query 2641 ATCGGCTTGGGCCGCAGATGTAGAGGGA-TTTGGGC 2675
|| || || || ||||||||| ||||||
Sbjct 198 TTCTTGACGGTCCTTCGAGGTAGAGGGAGATTGGGC 163
>seq39463
Length=326
Score = 84.2 bits (92), Expect = 5e-13
Identities = 117/162 (72%), Gaps = 4/162 (2%)
Strand=Plus/Plus
Query 2479 tttGGGACCCCACTAAGGATT--TCATAACCTCATGTGAGATTTTGGTGTATTGGATGTC 2536
||||| | || |||| |||| |||| | ||| | || | ||| ||||| ||||||
Sbjct 10 TTTGGCAGCCAACTA--GATTCTTCATTAATTCAGTTTGGACTGTGGAGTATTTGATGTC 67
Query 2537 ATCAATGACGTTATACAGTGCGTGGTCGTTGTAGTCGTGGAATTTGATGGCACCCGTGAA 2596
||| |||||||| || ||| | | || ||| || | ||| | || || | |||
Sbjct 68 ATCGATGACGTTGTAGCATGCTTCTTGGTCGTAATCCTTGAAACTTATTCTGCCTGAGAA 127
Query 2597 GTAGTTGTGTAGGCCTAAACTTCTGGCCCAGGCGGTTTTGCC 2638
|||||||||| | || | ||||||||||||||||||||| ||
Sbjct 128 GTAGTTGTGTCGTCCGAGACTTCTGGCCCAGGCGGTTTTTCC 169
>seq155727
Length=3041
Score = 80.6 bits (88), Expect = 6e-12
Identities = 158/229 (69%), Gaps = 10/229 (4%)
Strand=Plus/Plus
Query 2479 tttGGGACCCCACTAAGGATT--TCATAACCTCATGTGAGATTTTGGTGTATTGGATGTC 2536
||||| | || |||| |||| |||| | ||| | || | ||| ||||| ||||||
Sbjct 10 TTTGGCAGCCAACTA--GATTCTTCATTAATTCAGTTTGGACTGTGGAGTATTTGATGTC 67
Query 2537 ATCAATGACGTTATACAGTGCGTGGTCGTTGTAGTCGTGGAATTTGATGGCACCCGTGAA 2596
||| ||||| || || ||| | | || ||| || | ||| | || || | |||
Sbjct 68 ATCGATGACATTGTAGCATGCTTCTTGGTCGTAATCCTTGAAACTTATTTTGCCTGAGAA 127
Query 2597 GTAGTTGTGTAGGCCTAAACTTCTGGCCCAGGCGGTTTTGCCTGATCGGCTTGGGCCGCA 2656
|||||||||| | || | ||||||| |||||| |||||| || | || || ||
Sbjct 128 GTAGTTGTGTCGTCCGAGACTTCTGCCCCAGGTGGTTTTTCCAGTTCTTGACGGTCCTTC 187
Query 2657 GATGTAGAGGGA-TTTGGGCCTGTCGG--GCTTGGAGTCTGGTTCCTGT 2702
|| ||||||||| |||||| | | || ||| | ||||||||||||
Sbjct 188 GAGGTAGAGGGAGATTGGGCATATTGGCCGCT---ATTCTGGTTCCTGT 233
>seq124949
Length=1665
Score = 80.6 bits (88), Expect = 6e-12
Identities = 120/169 (71%), Gaps = 1/169 (1%)
Strand=Plus/Plus
Query 2508 TCATGTGAGATTTTGGTGTATTGGATGTCATCAATGACGTTATACAGTGCGTGGTCGTTG 2567
||| || || | ||| |||| ||||||||| |||||||| || ||| | | || |
Sbjct 7 TCAGGTTGGACTGTGGACTATTTGATGTCATCGATGACGTTGTAGCATGCTTCTTGGTCG 66
Query 2568 TAGTCGTGGAATTTGATGGCACCCGTGAAGTAGTTGTGTAGGCCTAAACTTCTGGCCCAG 2627
|| || | ||| | || | || | ||||||||||||| | | | |||||||||||||
Sbjct 67 TAATCCTTGAAACTTATTGTGCCTGAGAAGTAGTTGTGTTGTCTAAGACTTCTGGCCCAG 126
Query 2628 GCGGTTTTGCCTGATCGGCTTGGGCCGCAGATGTAGAGGGA-TTTGGGC 2675
||||||| || | || ||| || || ||||||||| ||||||
Sbjct 127 ACGGTTTTTCCAGCTCTTGATGGTCCTTCGAGGTAGAGGGAGATTGGGC 175
>seq36209
Length=316
Score = 80.6 bits (88), Expect = 6e-12
Identities = 88/117 (75%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 2522 GGTGTATTGGATGTCATCAATGACGTTATACAGTGCGTGGTCGTTGTAGTCGTGGAATTT 2581
|| ||||| ||||||||| |||||||| || ||| | | || ||| || | ||| |
Sbjct 11 GGAGTATTTGATGTCATCGATGACGTTGTAGCATGCTTCTTGGTCGTAATCCTTGAAACT 70
Query 2582 GATGGCACCCGTGAAGTAGTTGTGTAGGCCTAAACTTCTGGCCCAGGCGGTTTTGCC 2638
|| || | ||||||||||||| | || | ||||||||||||||||||||| ||
Sbjct 71 TATTCTGCCTGAGAAGTAGTTGTGTCGTCCGAGACTTCTGGCCCAGGCGGTTTTTCC 127
>seq22095
Length=277
Score = 80.6 bits (88), Expect = 6e-12
Identities = 109/151 (72%), Gaps = 1/151 (1%)
Strand=Plus/Minus
Query 2526 TATTGGATGTCATCAATGACGTTATACAGTGCGTGGTCGTTGTAGTCGTGGAATTTGATG 2585
|||| ||||||||| |||||||| || ||| | | || ||| || | ||| | ||
Sbjct 277 TATTTGATGTCATCGATGACGTTGTAGCATGCTTCTTGGTCGTAATCCTTGAAACTTATT 218
Query 2586 GCACCCGTGAAGTAGTTGTGTAGGCCTAAACTTCTGGCCCAGGCGGTTTTGCCTGATCGG 2645
|| | ||||||||||||| | || | ||||||||||||||||||||| || | ||
Sbjct 217 CTGCCTGAGAAGTAGTTGTGTCGTCCGAGACTTCTGGCCCAGGCGGTTTTTCCCGTTCTT 158
Query 2646 CTTGGGCCGCAGATGTAGAGGGA-TTTGGGC 2675
|| || || ||||||||| ||||||
Sbjct 157 GACGGTCCTTCGAGGTAGAGGGAGATTGGGC 127
>seq155348
Length=3015
Score = 78.8 bits (86), Expect = 2e-11
Identities = 134/191 (70%), Gaps = 5/191 (3%)
Strand=Plus/Plus
Query 2455 ACTTAATGTTAACGGTAATGtttttttGGGACCCCACTAAGGATT--TCATAACCTCATG 2512
|||||||| |||| | | | | ||||| | || |||| |||| |||| | |||
Sbjct 1846 ACTTAATGAAAACGCTGAAATCTCTTTGGCAGCCAACTA--GATTATTCATTAATTCAAT 1903
Query 2513 TGAGATTTTGGTGTATTGGATGTCATCAATGACGTTATACAGTGCGTGGTCGTTGTAGTC 2572
| |||| ||| ||||| ||| ||||| |||||||| || ||| | | || ||| ||
Sbjct 1904 TTGGATTGTGGAGTATTTGATTTCATCGATGACGTTGTAGCATGCTTCTTGGTCGTATTC 1963
Query 2573 GTGGAATTTGATGGCACCCGTGAAGTAGTTGTGTAGGCCTAAACTTCTGGCCCAGGCGGT 2632
| || || || | | | ||||||||||||| | | | ||||||||||||| ||||
Sbjct 1964 TTTAAACTT-ATTCTAACTGAGAAGTAGTTGTGTCGTTCGAGACTTCTGGCCCAGACGGT 2022
Query 2633 TTTGCCTGATC 2643
||| | || ||
Sbjct 2023 TTTTCTTGTTC 2033
>seq69661
Length=582
Score = 78.8 bits (86), Expect = 2e-11
Identities = 154/226 (68%), Gaps = 4/226 (2%)
Strand=Plus/Plus
Query 2412 ATTATGGACGGTATGCCTCCCTTAATAGTGCGATCGGGTCTATACTTAATGTTAACGGTA 2471
|| || |||||||| || || ||||| | || || | |||||||| ||| |
Sbjct 5 ATAATAGACGGTATTCCGCCTTTAATTAATAGGTCTGGCTGAAACTTAATGAAGACGTTG 64
Query 2472 ATGtttttttGGGACCCCACTAAGGATT--TCATAACCTCATGTGAGATTTTGGTGTATT 2529
| | | ||||| | || |||| |||| |||| | ||| | || | ||| |||||
Sbjct 65 AAATCTCTTTGGCAGCCAACTA--GATTCTTCATTAATTCAGTTTGGACTGTGGAGTATT 122
Query 2530 GGATGTCATCAATGACGTTATACAGTGCGTGGTCGTTGTAGTCGTGGAATTTGATGGCAC 2589
||||||||| |||||||| || ||| | | || || || | ||| | || |
Sbjct 123 TGATGTCATCGATGACGTTGTAGCATGCTTCTTGGTCATAATCCTTGAAACTTATTCTGC 182
Query 2590 CCGTGAAGTAGTTGTGTAGGCCTAAACTTCTGGCCCAGGCGGTTTT 2635
| | ||||||||||||| | || | |||| |||||||| |||||||
Sbjct 183 CTGAGAAGTAGTTGTGTCGTCCGAGACTTTTGGCCCAGACGGTTTT 228
>seq142455
Length=2324
Score = 77.0 bits (84), Expect = 7e-11
Identities = 113/160 (71%), Gaps = 0/160 (0%)
Strand=Plus/Minus
Query 2479 tttGGGACCCCACTAAGGATTTCATAACCTCATGTGAGATTTTGGTGTATTGGATGTCAT 2538
||||| | || |||| |||||| | ||| | || | ||| ||| | ||||||||
Sbjct 831 TTTGGTAGCCAACTAGATTTTTCATTAATTCAGTTTGGAATGTGGAGTACTTGATGTCAT 772
Query 2539 CAATGACGTTATACAGTGCGTGGTCGTTGTAGTCGTGGAATTTGATGGCACCCGTGAAGT 2598
|||||||||| || ||| || | || ||| || | ||| | || || || |||||
Sbjct 771 CAATGACGTTGTAGCATGCTTGTTGGTCGTAATCCTTGAAACTTATTCTACTCGAGAAGT 712
Query 2599 AGTTGTGTAGGCCTAAACTTCTGGCCCAGGCGGTTTTGCC 2638
|||||||| | | | |||||||||||| || |||| ||
Sbjct 711 AGTTGTGTCGTCTGAGACTTCTGGCCCAAACGATTTTTCC 672
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 11510739386475
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