Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_018151.1 Length=3640 Score E Sequences producing significant alignments: (Bits) Value seq43528 95.1 3e-16 seq27506 89.7 1e-14 seq82647 84.2 5e-13 seq42475 84.2 5e-13 seq39463 84.2 5e-13 seq155727 80.6 6e-12 seq124949 80.6 6e-12 seq36209 80.6 6e-12 seq22095 80.6 6e-12 seq155348 78.8 2e-11 seq69661 78.8 2e-11 seq142455 77.0 7e-11 >seq43528 Length=345 Score = 95.1 bits (104), Expect = 3e-16 Identities = 189/277 (68%), Gaps = 5/277 (2%) Strand=Plus/Plus Query 2402 ATTAACACATATTATGGACGGTATGCCTCCCTTAATAGTGCGATCGGGTCTATACTTAAT 2461 |||||| | || || |||||||| || || ||||| | || || | ||||||| Sbjct 57 ATTAACTAAGATAATAGACGGTATTCCGCCTTTAATTAATAGGTCTGGCTGAAACTTAAT 116 Query 2462 GTTAACGGTAATGtttttttGGGACCCCACTAAGGATT--TCATAACCTCATGTGAGATT 2519 | ||| | | | | ||||| | || |||| |||| |||| | ||| | || | Sbjct 117 GAAGACGTTGAAATCTCTTTGGCAGCCAACTA--GATTCTTCATTAATTCAGTTTGGACT 174 Query 2520 TTGGTGTATTGGATGTCATCAATGACGTTATACAGTGCGTGGTCGTTGTAGTCGTGGAAT 2579 ||| ||||| ||||||||| |||||||| || ||| | | || ||| || | ||| Sbjct 175 GTGGAGTATTTGATGTCATCGATGACGTTGTAGCATGCTTCTTGGTCGTAATCCTTGAAA 234 Query 2580 TTGATGGCACCCGTGAAGTAGTTGTGTAGGCCTAAACTTCTGGCCCAGGCGGTTTTGCCT 2639 | || || | ||||||||||||| | || | ||||||| ||||||||||||| || Sbjct 235 CTTATTCTGCCTGAGAAGTAGTTGTGTCGTCCGAGACTTCTGACCCAGGCGGTTTTTCCC 294 Query 2640 GATCGGCTTGGGCCGCAGATGTAGAGGGA-TTTGGGC 2675 | || || || || ||||||||| |||||| Sbjct 295 GTTCTTGACGGTCCTTCGAGGTAGAGGGAGATTGGGC 331 >seq27506 Length=293 Score = 89.7 bits (98), Expect = 1e-14 Identities = 156/224 (70%), Gaps = 5/224 (2%) Strand=Plus/Plus Query 2455 ACTTAATGTTAACGGTAATGtttttttGGGACCCCACTAAGGATT--TCATAACCTCATG 2512 |||||||| ||| | | | | ||||| | || |||| |||| |||| | ||| Sbjct 28 ACTTAATGAAGACGTTGAAATCTCTTTGGCAGCCAACTA--GATTCTTCATTAATTCAGT 85 Query 2513 TGAGATTTTGGTGTATTGGATGTCATCAATGACGTTATACAGTGCGTGGTCGTTGTAGTC 2572 | || | ||| ||||| ||||||||| |||||||| || ||| | | || ||| || Sbjct 86 TTGGACTGTGGAGTATTTGATGTCATCGATGACGTTGTAGCATGCTTCTTGGTCGTAATC 145 Query 2573 GTGGAATTTGATGGCACCCGTGAAGTAGTTGTGTAGGCCTAAACTTCTGGCCCAGGCGGT 2632 | ||| | || || | ||||||||||||| | || | |||||||||||||||||| Sbjct 146 CTTGAAACTTATTCTGCCTGAGAAGTAGTTGTGTCGTCCGAGACTTCTGGCCCAGGCGGT 205 Query 2633 TTTGCCTGATCGGCTTGGGCCGCAGATGTAGAGGGA-TTTGGGC 2675 ||| || | || || || || ||||||||| |||||| Sbjct 206 TTTTCCCGTTCTTGACGGTCCTTCGAGGTAGAGGGAGATTGGGC 249 >seq82647 Length=746 Score = 84.2 bits (92), Expect = 5e-13 Identities = 160/230 (70%), Gaps = 12/230 (5%) Strand=Plus/Plus Query 2479 tttGGGACCCCACTAAGGATT--TCATAACCTCATGTGAGATTTTGGTGTATTGGATGTC 2536 ||||| | || |||| |||| |||| | ||| | || | ||| ||||| |||||| Sbjct 12 TTTGGCAGCCAACTA--GATTCTTCATTAATTCAGTTTGGACTGTGGAGTATTTGATGTC 69 Query 2537 ATCAATGACGTTATACAGTGCGTGGTCGTTGTAGTCGTGGAATTTGATGGCACCCGTGAA 2596 ||| |||||||| || ||| | | || ||| || | ||| | || ||| | ||| Sbjct 70 ATCGATGACGTTGTAACATGCTTTTTGGTCGTAATCCTTGAAACTTATTCTACCTGAGAA 129 Query 2597 GTAGTTGTGTAGGCCTAAACTTCTGGCCCAGGCGGTTTTGCCTGATCGGCTTG---GGCC 2653 |||||| ||| | || | |||||||||||| |||||||| || | | |||| | || Sbjct 130 GTAGTTATGTCGTCCGAGACTTCTGGCCCAAGCGGTTTTTCCAGTT---CTTGACAGTCC 186 Query 2654 GCAGATGTAGAGGGA-TTTGGGCCTGTCGGGCTTGGAGTCTGGTTCCTGT 2702 || ||||||||| |||||| | | || | | |||||||||||| Sbjct 187 TTCGAGGTAGAGGGAGATTGGGCGTATTGGTCGCTG-TTCTGGTTCCTGT 235 >seq42475 Length=339 Score = 84.2 bits (92), Expect = 5e-13 Identities = 113/156 (72%), Gaps = 1/156 (1%) Strand=Plus/Minus Query 2521 TGGTGTATTGGATGTCATCAATGACGTTATACAGTGCGTGGTCGTTGTAGTCGTGGAATT 2580 ||| ||||| ||||||||| |||||||| || ||| | | || ||| || | ||| Sbjct 318 TGGAGTATTTGATGTCATCGATGACGTTGTAGCATGCTTCTTGGTCGTAATCCTTGAAAC 259 Query 2581 TGATGGCACCCGTGAAGTAGTTGTGTAGGCCTAAACTTCTGGCCCAGGCGGTTTTGCCTG 2640 | || || | ||||||||||||| | || | ||||||||||||||||||||| || | Sbjct 258 TTATTCTGCCTGAGAAGTAGTTGTGTCGTCCGAGACTTCTGGCCCAGGCGGTTTTTCCCG 199 Query 2641 ATCGGCTTGGGCCGCAGATGTAGAGGGA-TTTGGGC 2675 || || || || ||||||||| |||||| Sbjct 198 TTCTTGACGGTCCTTCGAGGTAGAGGGAGATTGGGC 163 >seq39463 Length=326 Score = 84.2 bits (92), Expect = 5e-13 Identities = 117/162 (72%), Gaps = 4/162 (2%) Strand=Plus/Plus Query 2479 tttGGGACCCCACTAAGGATT--TCATAACCTCATGTGAGATTTTGGTGTATTGGATGTC 2536 ||||| | || |||| |||| |||| | ||| | || | ||| ||||| |||||| Sbjct 10 TTTGGCAGCCAACTA--GATTCTTCATTAATTCAGTTTGGACTGTGGAGTATTTGATGTC 67 Query 2537 ATCAATGACGTTATACAGTGCGTGGTCGTTGTAGTCGTGGAATTTGATGGCACCCGTGAA 2596 ||| |||||||| || ||| | | || ||| || | ||| | || || | ||| Sbjct 68 ATCGATGACGTTGTAGCATGCTTCTTGGTCGTAATCCTTGAAACTTATTCTGCCTGAGAA 127 Query 2597 GTAGTTGTGTAGGCCTAAACTTCTGGCCCAGGCGGTTTTGCC 2638 |||||||||| | || | ||||||||||||||||||||| || Sbjct 128 GTAGTTGTGTCGTCCGAGACTTCTGGCCCAGGCGGTTTTTCC 169 >seq155727 Length=3041 Score = 80.6 bits (88), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 10/229 (4%) Strand=Plus/Plus Query 2479 tttGGGACCCCACTAAGGATT--TCATAACCTCATGTGAGATTTTGGTGTATTGGATGTC 2536 ||||| | || |||| |||| |||| | ||| | || | ||| ||||| |||||| Sbjct 10 TTTGGCAGCCAACTA--GATTCTTCATTAATTCAGTTTGGACTGTGGAGTATTTGATGTC 67 Query 2537 ATCAATGACGTTATACAGTGCGTGGTCGTTGTAGTCGTGGAATTTGATGGCACCCGTGAA 2596 ||| ||||| || || ||| | | || ||| || | ||| | || || | ||| Sbjct 68 ATCGATGACATTGTAGCATGCTTCTTGGTCGTAATCCTTGAAACTTATTTTGCCTGAGAA 127 Query 2597 GTAGTTGTGTAGGCCTAAACTTCTGGCCCAGGCGGTTTTGCCTGATCGGCTTGGGCCGCA 2656 |||||||||| | || | ||||||| |||||| |||||| || | || || || Sbjct 128 GTAGTTGTGTCGTCCGAGACTTCTGCCCCAGGTGGTTTTTCCAGTTCTTGACGGTCCTTC 187 Query 2657 GATGTAGAGGGA-TTTGGGCCTGTCGG--GCTTGGAGTCTGGTTCCTGT 2702 || ||||||||| |||||| | | || ||| | |||||||||||| Sbjct 188 GAGGTAGAGGGAGATTGGGCATATTGGCCGCT---ATTCTGGTTCCTGT 233 >seq124949 Length=1665 Score = 80.6 bits (88), Expect = 6e-12 Identities = 120/169 (71%), Gaps = 1/169 (1%) Strand=Plus/Plus Query 2508 TCATGTGAGATTTTGGTGTATTGGATGTCATCAATGACGTTATACAGTGCGTGGTCGTTG 2567 ||| || || | ||| |||| ||||||||| |||||||| || ||| | | || | Sbjct 7 TCAGGTTGGACTGTGGACTATTTGATGTCATCGATGACGTTGTAGCATGCTTCTTGGTCG 66 Query 2568 TAGTCGTGGAATTTGATGGCACCCGTGAAGTAGTTGTGTAGGCCTAAACTTCTGGCCCAG 2627 || || | ||| | || | || | ||||||||||||| | | | ||||||||||||| Sbjct 67 TAATCCTTGAAACTTATTGTGCCTGAGAAGTAGTTGTGTTGTCTAAGACTTCTGGCCCAG 126 Query 2628 GCGGTTTTGCCTGATCGGCTTGGGCCGCAGATGTAGAGGGA-TTTGGGC 2675 ||||||| || | || ||| || || ||||||||| |||||| Sbjct 127 ACGGTTTTTCCAGCTCTTGATGGTCCTTCGAGGTAGAGGGAGATTGGGC 175 >seq36209 Length=316 Score = 80.6 bits (88), Expect = 6e-12 Identities = 88/117 (75%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 2522 GGTGTATTGGATGTCATCAATGACGTTATACAGTGCGTGGTCGTTGTAGTCGTGGAATTT 2581 || ||||| ||||||||| |||||||| || ||| | | || ||| || | ||| | Sbjct 11 GGAGTATTTGATGTCATCGATGACGTTGTAGCATGCTTCTTGGTCGTAATCCTTGAAACT 70 Query 2582 GATGGCACCCGTGAAGTAGTTGTGTAGGCCTAAACTTCTGGCCCAGGCGGTTTTGCC 2638 || || | ||||||||||||| | || | ||||||||||||||||||||| || Sbjct 71 TATTCTGCCTGAGAAGTAGTTGTGTCGTCCGAGACTTCTGGCCCAGGCGGTTTTTCC 127 >seq22095 Length=277 Score = 80.6 bits (88), Expect = 6e-12 Identities = 109/151 (72%), Gaps = 1/151 (1%) Strand=Plus/Minus Query 2526 TATTGGATGTCATCAATGACGTTATACAGTGCGTGGTCGTTGTAGTCGTGGAATTTGATG 2585 |||| ||||||||| |||||||| || ||| | | || ||| || | ||| | || Sbjct 277 TATTTGATGTCATCGATGACGTTGTAGCATGCTTCTTGGTCGTAATCCTTGAAACTTATT 218 Query 2586 GCACCCGTGAAGTAGTTGTGTAGGCCTAAACTTCTGGCCCAGGCGGTTTTGCCTGATCGG 2645 || | ||||||||||||| | || | ||||||||||||||||||||| || | || Sbjct 217 CTGCCTGAGAAGTAGTTGTGTCGTCCGAGACTTCTGGCCCAGGCGGTTTTTCCCGTTCTT 158 Query 2646 CTTGGGCCGCAGATGTAGAGGGA-TTTGGGC 2675 || || || ||||||||| |||||| Sbjct 157 GACGGTCCTTCGAGGTAGAGGGAGATTGGGC 127 >seq155348 Length=3015 Score = 78.8 bits (86), Expect = 2e-11 Identities = 134/191 (70%), Gaps = 5/191 (3%) Strand=Plus/Plus Query 2455 ACTTAATGTTAACGGTAATGtttttttGGGACCCCACTAAGGATT--TCATAACCTCATG 2512 |||||||| |||| | | | | ||||| | || |||| |||| |||| | ||| Sbjct 1846 ACTTAATGAAAACGCTGAAATCTCTTTGGCAGCCAACTA--GATTATTCATTAATTCAAT 1903 Query 2513 TGAGATTTTGGTGTATTGGATGTCATCAATGACGTTATACAGTGCGTGGTCGTTGTAGTC 2572 | |||| ||| ||||| ||| ||||| |||||||| || ||| | | || ||| || Sbjct 1904 TTGGATTGTGGAGTATTTGATTTCATCGATGACGTTGTAGCATGCTTCTTGGTCGTATTC 1963 Query 2573 GTGGAATTTGATGGCACCCGTGAAGTAGTTGTGTAGGCCTAAACTTCTGGCCCAGGCGGT 2632 | || || || | | | ||||||||||||| | | | ||||||||||||| |||| Sbjct 1964 TTTAAACTT-ATTCTAACTGAGAAGTAGTTGTGTCGTTCGAGACTTCTGGCCCAGACGGT 2022 Query 2633 TTTGCCTGATC 2643 ||| | || || Sbjct 2023 TTTTCTTGTTC 2033 >seq69661 Length=582 Score = 78.8 bits (86), Expect = 2e-11 Identities = 154/226 (68%), Gaps = 4/226 (2%) Strand=Plus/Plus Query 2412 ATTATGGACGGTATGCCTCCCTTAATAGTGCGATCGGGTCTATACTTAATGTTAACGGTA 2471 || || |||||||| || || ||||| | || || | |||||||| ||| | Sbjct 5 ATAATAGACGGTATTCCGCCTTTAATTAATAGGTCTGGCTGAAACTTAATGAAGACGTTG 64 Query 2472 ATGtttttttGGGACCCCACTAAGGATT--TCATAACCTCATGTGAGATTTTGGTGTATT 2529 | | | ||||| | || |||| |||| |||| | ||| | || | ||| ||||| Sbjct 65 AAATCTCTTTGGCAGCCAACTA--GATTCTTCATTAATTCAGTTTGGACTGTGGAGTATT 122 Query 2530 GGATGTCATCAATGACGTTATACAGTGCGTGGTCGTTGTAGTCGTGGAATTTGATGGCAC 2589 ||||||||| |||||||| || ||| | | || || || | ||| | || | Sbjct 123 TGATGTCATCGATGACGTTGTAGCATGCTTCTTGGTCATAATCCTTGAAACTTATTCTGC 182 Query 2590 CCGTGAAGTAGTTGTGTAGGCCTAAACTTCTGGCCCAGGCGGTTTT 2635 | | ||||||||||||| | || | |||| |||||||| ||||||| Sbjct 183 CTGAGAAGTAGTTGTGTCGTCCGAGACTTTTGGCCCAGACGGTTTT 228 >seq142455 Length=2324 Score = 77.0 bits (84), Expect = 7e-11 Identities = 113/160 (71%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 2479 tttGGGACCCCACTAAGGATTTCATAACCTCATGTGAGATTTTGGTGTATTGGATGTCAT 2538 ||||| | || |||| |||||| | ||| | || | ||| ||| | |||||||| Sbjct 831 TTTGGTAGCCAACTAGATTTTTCATTAATTCAGTTTGGAATGTGGAGTACTTGATGTCAT 772 Query 2539 CAATGACGTTATACAGTGCGTGGTCGTTGTAGTCGTGGAATTTGATGGCACCCGTGAAGT 2598 |||||||||| || ||| || | || ||| || | ||| | || || || ||||| Sbjct 771 CAATGACGTTGTAGCATGCTTGTTGGTCGTAATCCTTGAAACTTATTCTACTCGAGAAGT 712 Query 2599 AGTTGTGTAGGCCTAAACTTCTGGCCCAGGCGGTTTTGCC 2638 |||||||| | | | |||||||||||| || |||| || Sbjct 711 AGTTGTGTCGTCTGAGACTTCTGGCCCAAACGATTTTTCC 672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 11510739386475