Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_025475.1 Length=2547 Score E Sequences producing significant alignments: (Bits) Value seq42475 77.0 5e-11 seq27506 77.0 5e-11 >seq42475 Length=339 Score = 77.0 bits (84), Expect = 5e-11 Identities = 86/113 (76%), Gaps = 4/113 (4%) Strand=Plus/Minus Query 1505 GAAGTAGTTGTGTCTTCCCAGACTTCTGGCCCAACTGGTCTTTCCGGTAC--GACTTGGT 1562 |||||||||||||| ||| |||||||||||||| ||| ||||| || | ||| ||| Sbjct 245 GAAGTAGTTGTGTCGTCCGAGACTTCTGGCCCAGGCGGTTTTTCCCGTTCTTGAC--GGT 188 Query 1563 CCGCAGATGTAGAGGGATCTTCGCCGGAGTTGGAGTTGTTCGGGTTCCTGGTA 1615 || || ||||||||| || | |||| | | | ||||| |||||||| || Sbjct 187 CCTTCGAGGTAGAGGGAGATTGGGCGGATTGGCCGCTGTTCTGGTTCCTGTTA 135 >seq27506 Length=293 Score = 77.0 bits (84), Expect = 5e-11 Identities = 86/113 (76%), Gaps = 4/113 (4%) Strand=Plus/Plus Query 1505 GAAGTAGTTGTGTCTTCCCAGACTTCTGGCCCAACTGGTCTTTCCGGTAC--GACTTGGT 1562 |||||||||||||| ||| |||||||||||||| ||| ||||| || | ||| ||| Sbjct 167 GAAGTAGTTGTGTCGTCCGAGACTTCTGGCCCAGGCGGTTTTTCCCGTTCTTGAC--GGT 224 Query 1563 CCGCAGATGTAGAGGGATCTTCGCCGGAGTTGGAGTTGTTCGGGTTCCTGGTA 1615 || || ||||||||| || | |||| | | | ||||| |||||||| || Sbjct 225 CCTTCGAGGTAGAGGGAGATTGGGCGGATTGGCCGCTGTTCTGGTTCCTGTTA 277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8024494255274