Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ziziphus_20jujuba_20[refseq_20GCF_5F000826755.1_202015-02-06] 4,789 sequences; 437,753,511 total letters Query= NC_001954.1 Length=8454 Score E Sequences producing significant alignments: (Bits) Value seq74 116 2e-22 >seq74 Length=251313 Score = 116 bits (128), Expect = 2e-22 Identities = 309/466 (66%), Gaps = 12/466 (3%) Strand=Plus/Minus Query 6597 TATCGCAAATATCCGCAGAGACTACCTTCATAAAGTCACAACGACCGTCAGCAAAAACCA 6656 ||| || ||||| || |||||| | || |||||||| || || ||||||||||||| Sbjct 170804 TATTGCCAATATTCGGCATGACTACTTGCACAAAGTCACGACAACTCTCAGCAAAAACCA 170745 Query 6657 CGCAATGATAGTCATTGAGGATTTGAAGGTCAGCAACATGTCAAAGTCAGCAGCGGGTAC 6716 ||||||||| || ||||||| || || || ||| ||||| |||||||| || | Sbjct 170744 CGCAATGATCGTAGTTGAGGACTTAAAAGTAGCCAATATGTCGAAGTCAGCCAAAGGCTC 170685 Query 6717 GGTCAGCCAGCCGGGGCGCAATGTCCGGGCAAAATCAGGTTTAAACCGTTCGATACTGGA 6776 || | || ||||| || ||||||||||| ||| || || || || Sbjct 170684 AATCGAAGAAAAAGGAAAGAATGTTAAAGCTAAATCAGGTTTGAACAAATCAATCCTAGA 170625 Query 6777 TCAGGGCTGGTATGAAATGCGCCGCCA---GCTTGAGTACAAACAGCTCTGGCGTGGAGG 6833 ||| || |||| ||||| | | | | ||||||||||| ||||| || || Sbjct 170624 TCAAGGTTGGT---CAATGCTTGTTAATATGTTGGTGTACAAACAGCAATGGCGAGGTGG 170568 Query 6834 TCAGGTGCTTGCTGTTCCGCCAGCGTACACAAGCCAGCGTTGCGCGTGCTGTGGTCATAC 6893 | | || ||| || || ||||| ||| ||| | |||||||| Sbjct 170567 TTTACTCGTTAAAGTTGACCCTAAATATACAAGTCAGACTTGTAGTTCATGTGGTCACGT 170508 Query 6894 AGCGAAAGAAAACCGCCTGTCACAAAGTCAA--TTCAGATGCCAGGTATGTGGATATACA 6951 || |||||||| | | |||| || ||| || || || | ||||| | || Sbjct 170507 TGCAAAAGAAAATAGGC--TCACTCAGGCAAACTTTAGTTGTGTCGAGTGTGGCTTTAGC 170450 Query 6952 GCGAACGCCGATGTAAATGGCGCTCGTAACATTTTAGCGGCGGGGCACGCCGTACTTGCC 7011 | ||| || ||| | |||| |||| ||||||||||||| ||| ||| |||| ||| | Sbjct 170449 GAGAATGCAGATATTAATGCTTCTCGCAACATTTTAGCGGTGGGACACACCGT-TTTGTC 170391 Query 7012 TGTGGAGGGACGATGCAGT-CAGACCGCCCGTTGAAGCAGGAACCA 7056 ||| |||||| ||||| || ||| ||||| |||||||| || || Sbjct 170390 TGTCGAGGGAAGATGCGGTAAAGATCGCCCTGTGAAGCAGAAAGCA 170345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 26936148703128