Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ziziphus_20jujuba_20[refseq_20GCF_5F000826755.1_202015-02-06] 4,789 sequences; 437,753,511 total letters Query= NC_003822.1 Length=2580 Score E Sequences producing significant alignments: (Bits) Value seq2 86.0 1e-13 >seq2 Length=27986743 Score = 86.0 bits (94), Expect = 1e-13 Identities = 166/244 (68%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 1623 GGCACTCCTCCCTTTATTTTC--TTCTTTTTTCCATACTTAGGGTTGACAGTAAAATCAG 1680 || || ||||| || |||| | || ||||||||||| || |||||||| || | || | Sbjct 23095266 GGGACCCCTCCTTTGATTTGCCTTTTTTTTTTCCATATTTTGGGTTGACGGTGTAGTCGG 23095325 Query 1681 ACTGGCAACCTATTAATTGCTTCCAGAGTGGGACGAATTTGAAGGGGATGTCGTCGATGA 1740 | ||| || || | ||| | | | ||||||| | | || ||||| || | | Sbjct 23095326 ATTGGATCCCGATGATGGACTTGAACGGATGCACGAATTGGCAAGGTATGTCATCCACAA 23095385 Query 1741 CGTTGTAGGTCGCGTGGTCATCATAGACAGTGAAGTCGATGGTCCCATTCCAGTAATTGT 1800 ||| || || || | ||||| ||| |||||||||||| | || ||| || |||| Sbjct 23095386 TGTTATAAGTTGCTCGCTCATCGTAGTTTGTGAAGTCGATGTTGCCGGCCCAATAGTTGT 23095445 Query 1801 GCCTTCCGAGGCTTCTGGCCCATGTTGTCTTTCCGGTACGACTTGGTCCGCAGATGTAGA 1860 || ||| || ||||||||| ||||| ||||| || ||||| ||||| || | Sbjct 23095446 GCGGTCCAAGAGATCTGGCCCAACAGGTCTTGCCGGTTCGTGAGGGTCCACAGATATATA 23095505 Query 1861 GGGA 1864 ||| Sbjct 23095506 AGGA 23095509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8146785445004