Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_002014.1 Length=6883 Score E Sequences producing significant alignments: (Bits) Value seq744856 349 1e-92 >seq744856 Length=220 Score = 349 bits (386), Expect = 1e-92 Identities = 210/220 (95%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 1261 AACGCTGCTTAATTTAAATAATCGAGAGATAT--ATTATGTTAACTGTTGAAATTCACGA 1318 |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1 AACGCTGCTTAATTTAAATAATCGAGAGATATATATTATGTTAACTGTTGAAATTCACGA 60 Query 1319 TTCTCAAGTTTCTGTTAAAGAGCGCTCTGGCGTTTCTCAAAAGTCCGGTAAGCCTTATAC 1378 ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| || Sbjct 61 ATCTCAAGTTTCCGTTAAAGAGCGCTCTGGCGTTTCTCAAAAGTCTGGTAAGCCTTACAC 120 Query 1379 TATTCGTGAGCAGGAAGCCTATATTGATCTCGGCGGCGTTTATCCTGCGCTGTTTAACTT 1438 ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| Sbjct 121 TATTCGTGAGCAGGAAGCCTATATTGACCTCGGCGGCGTTTATCCTGCCCTGTTTAACTT 180 Query 1439 TAATCTTGAGGACGGTCAGCAACCTTACCCCGCTGGCAAG 1478 ||| ||||||||||||||||| |||||||||||||||||| Sbjct 181 TAACCTTGAGGACGGTCAGCATCCTTACCCCGCTGGCAAG 220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 21462174017360