Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_007821.1 Length=6068 Score E Sequences producing significant alignments: (Bits) Value seq11820 975 0.0 >seq11820 Length=5410 Score = 975 bits (1080), Expect = 0.0 Identities = 1335/1851 (72%), Gaps = 74/1851 (4%) Strand=Plus/Plus Query 2581 TTCAGGCTTCCGCTGTTCTGGATATTACCGAGGAGGATTTTGATTTCCTGACTGGTGATA 2640 |||||||||| || ||| ||||| | ||||| || ||||| ||||| ||||| || | | Sbjct 3032 TTCAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACA 3091 Query 2641 AAATTTGGATTGCTACTGACCGCAACCGTGCGCGTCGCTGTGTTGAGGCTTGTGTTTATG 2700 || |||||||||||||||||||| ||||| |||||||| ||||||||||| ||||||| Sbjct 3092 AAGTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATG 3151 Query 2701 GAACACTGGACTTTGTGGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCG 2760 | || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 3152 GTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCG 3211 Query 2761 TCATTGCTTATTATGTTCATCCCGTCAACATTCAGACGGCCTGCCTCATCATGGAAGGCG 2820 |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| Sbjct 3212 TCATTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCG 3271 Query 2821 CTGAGTTTACGGAAAACATTGTTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAGCTCT 2880 |||| ||||||||||||||| |||||||||||||||||||||||||||||||||| | | Sbjct 3272 CTGAATTTACGGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGT 3331 Query 2881 TCGCGTACACCTTGCGTGTTAAGGCCGGATTCAAAGAAACGGTT-CTGAGCGCTGAAGAG 2939 |||||| ||||||||||| || ||| || || || |||| ||| ||||| Sbjct 3332 TCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGA-CGCAGAAGAA 3390 Query 2940 AATGCTCGTCAGAAACTTCGTGCA-----AGTGGAGTAATGT---AATATGAAGAAAGCT 2991 || | ||||| ||| | |||||| |||| ||||||| || | || || | | Sbjct 3391 AACGTGCGTCAAAAATTACGTGCAGAAGGAGTGATGTAATGTCTAAAGGTAAAAAACGTT 3450 Query 2992 C-GTCGTTC-CCCTTCTCGT----------------------AAG--------AAAGGCG 3019 | | || || |||| |||| ||| ||||||| Sbjct 3451 CTGGCGCTCGCCCTGGTCGTCCGCAGCCGTTGCGAGGTACTAAAGGCAAGCGTAAAGGCG 3510 Query 3020 CTCGTCTCTGGTATGTAGGCGGTTCTCAATTTTAATTAACGGGGCTTCGGCCCCT---AT 3076 ||||||| ||||||||||| ||| ||||||||||| ||||||||||||||| | Sbjct 3511 CTCGTCTTTGGTATGTAGGTGGTCAACAATTTTAATTGCAGGGGCTTCGGCCCCTTACTT 3570 Query 3077 AAGGATTCTTAAATGTCAAACGTGCAAACTTCCGCTGAACGTATTCCTCACGACCTTTCT 3136 ||||| | ||||| || | |||||| ||| || ||||| || || |||||||| Sbjct 3571 GAGGATAAAT-TATGTCTAATATTCAAACTGGCGCCGAGCGTATGCCGCATGACCTTTCC 3629 Query 3137 CATCTGGTTTTTGATGCAGGCAAAATTGGTCGTTTAAAGGTTGTTTCTTGGACTCCTGTT 3196 ||||| | || ||| || | ||||||||| | | |||| ||||| ||| Sbjct 3630 CATCTTGGCTTCCTTGCTGGTCAGATTGGTCGTCTTATTACCATTTCAACTACTCCGGTT 3689 Query 3197 GTTGCAGGTGATTCTTTTGAGCTTGATATGATTGGCGCTATTCGCCTTTCCCCGCTTCGT 3256 | || || || || || ||| | || |||||||| | || ||||| || | ||| Sbjct 3690 ATCGCTGGCGACTCCTTCGAGATGGACGCCGTTGGCGCTCTCCGTCTTTCTCCATTGCGT 3749 Query 3257 CGTGGCCTTGCTGTTGACTCTCGTGTTGACCTGTTCACGTTTTATGTCCCTCATCGTCAT 3316 |||||||||||| |||||||| ||| ||| | || || |||||||||||||||||||| Sbjct 3750 CGTGGCCTTGCTATTGACTCTACTGTAGACATTTTTACTTTTTATGTCCCTCATCGTCAC 3809 Query 3317 GTATATGGTGAGCAGTGGATTGATTTTATGAAGCAAGGTGTTGATGCTGCTCCTTTGGCC 3376 || |||||||| ||||||||| | || |||||| | |||||| |||| ||||| | | Sbjct 3810 GTTTATGGTGAACAGTGGATTAAGTTCATGAAGGATGGTGTTAATGCCACTCCTCTCCCG 3869 Query 3377 CCTGTTCAGTGCTCTCGCGGTTGGGATAGTGCTCA------GTATCTTGCTACTATTCCG 3430 ||||| | | || |||| ||| || || | ||||| || ||| Sbjct 3870 ACTGTTAA---CACTACTGGTT---ATATTGACCATGCCGCTTTTCTTGGCACGATTAAC 3923 Query 3431 TCTAGTAACTTAAAGGTTCCTAAG--TTTCTTCATCAAGGTTACCTGAACATTTACAATA 3488 || || | || | |||||| ||| || ||| ||||| |||| || || || | Sbjct 3924 CCTGATACCAATAAAATCCCTAAGCATTTGTT--TCAGGGTTATTTGAATATCTATAACA 3981 Query 3489 ATTACTTTAAAGCTCCGTGGATGGATGACCTGACTTATGCCAACCCGTCTAATATGGAGG 3548 | || |||||||| ||||||||| ||||| || | || ||||| | | | | Sbjct 3982 ACTATTTTAAAGCGCCGTGGATGCCTGACCGTACCGAGGCTAACCCTAATGAGCTTAATC 4041 Query 3549 GTGAAGATGTTCGTTTTGGTGTTCGTGCATGTAACTTGAAAACTATTTGGACTGCTCCGC 3608 || |||| ||||| |||| | ||| || | | |||| |||||||||||||||| Sbjct 4042 AAGATGATGCTCGTTATGGTTTCCGTTGCTGCCATCTCAAAAACATTTGGACTGCTCCGC 4101 Query 3609 TTCCTCCGGATACTGAAACCTCTCATTCTATGGAGACTGAAACCAACTCCATTGACATTA 3668 ||||||| || ||||| |||| ||| |||| |||| || |||||||||| Sbjct 4102 TTCCTCCTGAGACTGAGCTTTCTCGCCAAATGACGACTTCTACCACATCTATTGACATTA 4161 Query 3669 TGGGTTTGCAGGCCGCTTATGCTCAATTACATACTGAGCAGGAGCGTGATTACTTCATGA 3728 ||||| |||| || ||||||||| | || |||||||| || || ||||||||||||||| Sbjct 4162 TGGGTCTGCAAGCTGCTTATGCTAATTTGCATACTGACCAAGAACGTGATTACTTCATGC 4221 Query 3729 CTCGTTATCGTGATATTGTTAACGAATTTGGAGGTAGTACTTCTTATGATGCGGATAATC 3788 ||||| | |||| || || ||||||||||| || |||||||| || || || | Sbjct 4222 AGCGTTACCATGATGTTATTTCTTCATTTGGAGGTAAAACCTCTTATGACGCTGACAACC 4281 Query 3789 GTCCTTTGCTTGTTATGCATTCTGAGTTCTGGGCCTCAGGCTATGATGTTGACGGCACCG 3848 ||||||| ||||| |||| ||| | ||||||| || |||||||||||||| || || | Sbjct 4282 GTCCTTTACTTGTCATGCGCTCTAATCTCTGGGCATCTGGCTATGATGTTGATGGAACTG 4341 Query 3849 ACCAAAGCTCTCTCGGTCAGTTCTCCGGTCGTGTCCAGCAGACGTTTAAGCATTCAGTAC 3908 |||||| || | || ||||| || |||||||| || ||||| | ||| ||||| || | Sbjct 4342 ACCAAACGTCGTTAGGCCAGTTTTCTGGTCGTGTTCAACAGACCTATAAACATTCTGTGC 4401 Query 3909 CGCGATTCTTCTGCCCTGAGCATGGCACTATGTTCACACTCGCATTGGTCCGCTTCCCGC 3968 |||| ||||| |||||||||||||||||||| || || || | || || || |||| Sbjct 4402 CGCGTTTCTTTGTTCCTGAGCATGGCACTATGTTTACTCTTGCGCTTGTTCGTTTTCCGC 4461 Query 3969 CGACT--CATGAAATGGAGATGCATTACTTAGTTGGTAAAGAAGATTTGACTTATACTGA 4026 | ||| | ||| ||||| || ||| | | ||||| | |||||||||||| || Sbjct 4462 CTACTGCGACTAAA--GAGATTCAGTACCTTAACGCTAAAGGTGCTTTGACTTATACCGA 4519 Query 4027 TTTGGCTTGTGACCCTGCTTTG-ATGGCTAACTTGCCTCCTCGTGAGGTTAATATGTCTC 4085 | | ||| | ||||||| |||| ||||| |||||||| || ||||| || |||| Sbjct 4520 TATTGCTGGCGACCCTGTTTTGTATGGC-AACTTGCCGCCGCGTGAAATTTCTATGAAGG 4578 Query 4086 AGTTCTTCCATTCTGGAAGTGCTAGTGCTAAGTTTAAGATCGCTGAAGGTCAGTGGTATC 4145 | | |||| |||||| | | | ||||||||||| ||||| ||||||||||||| Sbjct 4579 ATGTTTTCCGTTCTGGTGATTCGTCTAAGAAGTTTAAGATTGCTGAGGGTCAGTGGTATC 4638 Query 4146 G-CATGCAGCCTGATCG--CGTTGCATTGCCGTATAACTATCTTGATGGTTTTCCGTTCT 4202 | |||| |||| ||| ||| | | ||| || |||||| || || || ||| Sbjct 4639 GTTATGC-GCCT--TCGTATGTTTCTCCTGCTTATCACCTTCTTGAAGGCTTCCCATTCA 4695 Query 4203 ATAGCGCGATTCCGTCTGATGATATTAAGCAGCGCGTTCTGGTTAATACTGATAACTACG 4262 | | || |||| |||| | | | ||||| || || || | || | Sbjct 4696 TTCAGGAACCGCCTTCTGGTGATTTGCAAGAACGCGTACTTATTCGCCACCATGATTATG 4755 Query 4263 ATGAGGTTTTCCAGTCTATGCAGCTTGCGCACTGGAATATGCAGACTAAGTTTAATTGCA 4322 | || ||||||||| | ||| | ||| ||||||| ||| ||| |||||| | Sbjct 4756 ACCAGTGTTTCCAGTCCGTTCAGTTGTTGCAGTGGAATAGTCAGGTTAAATTTAATGTGA 4815 Query 4323 CCATTTATCGTAATATGCCGACCACTCGCGACTCTATTATGACCTCTTGAT 4373 || ||||||| ||| |||||||||||||||| || || ||||| || |||| Sbjct 4816 CCGTTTATCGCAATCTGCCGACCACTCGCGATTCAATCATGACTTCGTGAT 4866 Score = 165 bits (182), Expect = 3e-37 Identities = 278/398 (70%), Gaps = 6/398 (2%) Strand=Plus/Plus Query 1293 GGCTGGTTTTTCGTATTTGATACGTTGACACTTGCTGATGATCGTTTGCAGGCTTTTAAT 1352 || |||||| |||| ||||| || | || | ||||| || || || |||| ||| || Sbjct 1758 GGTTGGTTTATCGTTTTTGACACTCTCACGTTGGCTGACGACCGATTAGAGGCGTTTTAT 1817 Query 1353 GAAAACCCCAATGCTCTTCGTGATTATTTCAGGACTGTTGGTCGAGCTGTTCTGCGCGCT 1412 || || ||||||||| | ||||| ||||| | | ||||||| ||||| || Sbjct 1818 GATAATCCCAATGCTTTGCGTGACTATTTTCGTGATATTGGTCGTATGGTTCTTGCTGCC 1877 Query 1413 GAAGGTCGTTCGGTTAAGGATTCCTACAACGATTGCTATCGCTATCTTTGTGTGCCGGAG 1472 || ||||| || ||| ||||| || ||| ||||||| ||| |||||||||| ||| Sbjct 1878 GAGGGTCGCAAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCTGAG 1937 Query 1473 TTTGGAGGTCAGC--ACGGTCGTCTTCATTGGCATGTTGTGCATATGGTGCGGACTCTTC 1530 | ||| |||| | || |||||||||| |||| ||||| | ||||||| |||| Sbjct 1938 TATGGTA--CAGCTAATGGCCGTCTTCATTTCCATGCGGTGCACTTTATGCGGACACTTC 1995 Query 1531 CTTTGGGAAGTTACGACCCTAATTTCGGTCGCAAGGTACGTAATTATCGCCAGATTAACT 1590 || || || ||||||||||| ||||| |||||| ||| |||||| |||| | Sbjct 1996 CTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGGTACGCAATCGCCGCCAG-TTAAAT 2054 Query 1591 CG-TTCCGTGGCATGTGGCCTTATGGCTTCACGCAACCGATAGCTGTACGCTATCAACAT 1649 | || | | |||||||||||| | || || || || || ||||| || Sbjct 2055 AGCTTGCAAAATACGTGGCCTTATGGTTACAGTATGCCCATCGCAGTTCGCTACACGCAG 2114 Query 1650 GATGCTTATTCTCGCAAAGGTTGGTTGTGGCCTGTTGA 1687 || |||| ||| || |||||||||||||||||||| Sbjct 2115 GACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGA 2152 Score = 156 bits (172), Expect = 2e-34 Identities = 282/407 (69%), Gaps = 18/407 (4%) Strand=Plus/Plus Query 5443 AAGGACAAGCAACCCGTGATTACTTGGCTGCGGCCTTCCCTGAGCTCAATGCATGGGAAC 5502 ||||| | | || |||||||| | ||||| || || |||||||| ||||| ||||| | Sbjct 463 AAGGAAAGGATACTCGTGATTATCTTGCTGCTGCATTTCCTGAGCTTAATGCTTGGGAGC 522 Query 5503 GTGCTGGAGCTGGTGCTTCCGGTGCCGGATTGGAGTCTTCCGGCC---AGAATCAGCAAA 5559 ||||||| |||| ||||||| ||| || ||| |||| ||||||| || Sbjct 523 GTGCTGGTGCTGATGCTTCCTCTGCTGGTATGGTTGACGCCGGATTTGAGAATCA---AA 579 Query 5560 AGGAGTTGATGCGTATGCAGCTGGATACTCAGAAGGATATTGCTAAGATGCAAATGCATA 5619 | ||| | | ||||| ||||| | |||||| || ||||| ||||||||| | | Sbjct 580 AAGAGCTTACTAAAATGCAACTGGACAATCAGAAAGAGATTGCCGAGATGCAAAATGAGA 639 Query 5620 ATAATTTGCAGATTGCTGGTATTCAGTCCGCTACTTCTCGCGAGAATACGAAGGATTCAG 5679 | | |||||||||| |||||||| || ||||| ||| |||||||||| || | Sbjct 640 CTCAAAAAGAGATTGCTGGCATTCAGTCGGCGACTTCACGCCAGAATACGAAAGACCAGG 699 Query 5680 TTTATGCTCAGAATGAGATGCTTAAATTTAATCAACAGGAGTCACAGGCACGCGTTGAGT 5739 | ||||| || |||||||||||| | | | || ||||||| || ||||||| || Sbjct 700 TATATGCACAAAATGAGATGCTTGCTTATCAACAGAAGGAGTCTACTGCTCGCGTTGCGT 759 Query 5740 CTATCCTCGCCAACACTGACCTTAC--GGCTA-AACAGGCTGCCCATGAAATTATGAG-- 5794 |||| | | ||||| | ||| | || | | |||| | || || |||||| | Sbjct 760 CTATTATGGAAAACACCAATCTTTCCAAGCAACAGCAGGTTTCC---GAGATTATGCGCC 816 Query 5795 -AATGGCCCTTACTCGTGCTCAGGAGACTGGTCAGCATTTAACTAAT 5840 |||| ||||||| ||||| | |||||||| |||| || ||| Sbjct 817 AAATG---CTTACTCAAGCTCAAACGGCTGGTCAGTATTTTACCAAT 860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 18921631524900