Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_005131.2 Length=7118 Score E Sequences producing significant alignments: (Bits) Value seq3320 596 6e-167 seq18367 563 4e-157 seq29069 398 3e-107 seq1864375 190 9e-45 seq55439 143 1e-30 >seq3320 Length=669 Score = 596 bits (660), Expect = 6e-167 Identities = 539/673 (80%), Gaps = 10/673 (1%) Strand=Plus/Plus Query 3735 CAACCTGGAAACGGTAAGAGCCTCTACACGATTGCGTTTGTTGAGGCGAAGCGGAAGGCT 3794 ||||| || ||||||||||||||||| ||||| ||| || |||||||| || |||| Sbjct 2 CAACCAGGTAACGGTAAGAGCCTCTATACGATCGCGACGGTCGAGGCGAAACGACAGGCA 61 Query 3795 GAGAGCCGTCCGGTGTTCTACTTCGGCATTCCCGAGCTGTCGTTGCCTTGGACGATGCTG 3854 || || || ||||||||||| ||||||||| || || || | || ||||||| |||| Sbjct 62 GAAAGTCGGCCGGTGTTCTATCACGGCATTCCGGATCTCACGCTTCCGTGGACGAAGCTG 121 Query 3855 GACGATCCAACGAAGTGGCATGAGTGCCCGGAAAAATCGATCATCGTCATCGACGAGGTA 3914 || ||||| ||||||| | |||||||| ||||||||||||||||| || || ||||| Sbjct 122 GAGGATCCGGGGAAGTGGTACGAGTGCCCTGAAAAATCGATCATCGTGATTGATGAGGTG 181 Query 3915 CAGAAGGTCATGCCGCCGAGGCCTTCCAGCTCGAAGGCGCCGCTGCATGTTTCAGAGCTG 3974 |||||||||||||||||| |||| |||||||||||| | || | || || || ||||| Sbjct 182 CAGAAGGTCATGCCGCCGCGGCCGTCCAGCTCGAAGCCTCCTCAGCTGGTGTCCGAGCTT 241 Query 3975 GAGACCCATCGGCACAAGGGTTTCGATCTGTTCTTCATGACGCAGGACCCGAGCCTGGTC 4034 ||||| |||||||| || |||||||||||||||||||||||||| || ||||| || Sbjct 242 GAGACGCATCGGCATCGTGGCTTCGATCTGTTCTTCATGACGCAGGATCCCAGCCTCGTT 301 Query 4035 GATAACCATTTGAAGAAGCTCGCCGGCGAGCACATCCACCTGATTCGTCAGTGGGGCCGT 4094 ||||||||| ||||||||||||| || || || |||||||||||||| |||||||| || Sbjct 302 GATAACCATCTGAAGAAGCTCGCTGGTGAACATATCCACCTGATTCGGCAGTGGGGTCGC 361 Query 4095 CAGAAGGCGGATCTGTTCAAGATGCAGAAGGTGCAGGATCCAACGAACGCGAACCTTAAG 4154 ||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||| Sbjct 362 CAGAAGGCGGATCTGTTCAAGATGCAGAAGGTGCAGGATCCGACGAACGCGAATCTCAAG 421 Query 4155 CGTGCGTTGCACAGCAGCTTTCCGTATCCGAAGGAGGTGTTCGGCTGGTACAAGTCCGCC 4214 || ||||||||||||| ||| |||||||| ||| |||| |||| |||||||||||| ||| Sbjct 422 CGGGCGTTGCACAGCACCTTCCCGTATCCCAAGCAGGTTTTCGACTGGTACAAGTCTGCC 481 Query 4215 GATGCTCATACGCACAAGAAGGCGATTCCGCTGAAGTACTACATGATGTACGCGTTGCCG 4274 ||||||||||||||||||||| |||| ||| |||||||||| ||||||| | | ||| Sbjct 482 GATGCTCATACGCACAAGAAGACGATCCCGGCGAAGTACTACCTGATGTATGGCCTTCCG 541 Query 4275 GTGGT-GGCGT--TGGCGGCAGCGCTGTTCGGCGGTTGGAAGCTCTGGAAGATCTCGCAT 4331 ||||| | | ||||| || | | || |||||| || |||||| | |||||| Sbjct 542 GTGGTCATCATCCTGGCGTTGGCCC---TTGGTGGTTGGCGCCTGTGGAAGTTGTCGCAT 598 Query 4332 CCTGA--CGTACCGCAGGTACAAGTTCCTGTTTCTGGTGCCGCAGCTGGTCAACTAGGTG 4389 || || ||| | || || | | | |||||| | ||||||||| ||||| Sbjct 599 CCGGATTCGT--TGAAGCCTGCAGCTGCAGCAGCTGGTGGGCTATCTGGTCAACCAGGTG 656 Query 4390 CGCCTGGTGCAGC 4402 | || |||||||| Sbjct 657 CACCAGGTGCAGC 669 >seq18367 Length=1031 Score = 563 bits (624), Expect = 4e-157 Identities = 564/723 (78%), Gaps = 33/723 (5%) Strand=Plus/Minus Query 1334 ATGGCTCAGTGCGTGCAAATCGTTAGTGGTCAGTTTCAGCTTGATAGCGCTGCTGCATCG 1393 ||||||||||||||||||||||| ||||||||| ||||||| ||| || | |||||||| Sbjct 806 ATGGCTCAGTGCGTGCAAATCGTCAGTGGTCAGCTTCAGCTGGATGGCTCGCCTGCATCG 747 Query 1394 TCGTGCACGGGTTACCTGTTGCTGACTGCTGATGAGGTCACGCTGTTGCATGCGGTACCG 1453 |||||||||||||| ||||||||| | ||||||||||||||||||||||||||||| ||| Sbjct 746 TCGTGCACGGGTTATCTGTTGCTGTCGGCTGATGAGGTCACGCTGTTGCATGCGGTGCCG 687 Query 1454 CCGCTCTCGGTGAGCGACGGTGCCCTTATTGGGAGCGGGATGCTCGGCTTATGGGCTCTC 1513 |||||||||||||| |||||||||||||| || |||| ||||||||| | ||||||||| Sbjct 686 CCGCTCTCGGTGAGTGACGGTGCCCTTATCGGAAGCGCGATGCTCGGTCTTTGGGCTCTC 627 Query 1514 GCTTTCGTCTTTCGGTCCGCAGCGCGGGCCATTTATCAACGTGAAGAGGAGTAGGTCAAT 1573 |||||| | || ||| ||||||||||| |||| | |||||||||||||||||| |||| Sbjct 626 GCTTTCATTTTCCGGGCCGCAGCGCGGTCCATCGTTAAACGTGAAGAGGAGTAGGGCAAT 567 Query 1574 GAACTCGAATTT-CAAG-AAAGGTGCG-TTTGCTGTGGGTGCT------GCCGTTGCTGC 1624 |||| | ||| |||| | ||| | || ||||||||| || | ||| || Sbjct 566 GAACAAGTTTTTCCAAGTCTCGAAGCGCCTGGCAGTGGGTGCTGCTGCAGCTGGTGCCGC 507 Query 1625 TGGTTCGGCGATGGCGGAAGGTG---------TGGATGTGTCCGCAGTGGTC---ACCAC 1672 || | | || | ||| | || | ||| ||| | |||||| |||| Sbjct 506 TGTTGCTGCTAACGCGCAGACTGCGCCGTCGATCGATACGTCGTCGGTGGTCGCAACCAT 447 Query 1673 GCTCGGTACGGGTGTGGCTGCTATCGGTCTGATCGGAGTGGCGATTCTCGGTCTGGCTGC 1732 |||| ||| ||| ||| |||||| |||||| | || | || || || | Sbjct 446 CACCGGT---GGTCTGGTTGCGATCGGTGCGATCGGTCTTGCTGTGCTGGGCGTGTACGG 390 Query 1733 TGTGGTGGCGATCTACAACTGGGTTCGCAAG---CCGATCAAGTGA-CGTG-GCGGGGCG 1787 | | ||||||||||||||| | |||| |||||||||||| || | ||||| | Sbjct 389 CACGATCGCGATCTACAACTGGAT---CAAGCGCCCGATCAAGTGATCGAGCTCGGGGAG 333 Query 1788 CGCTCCCCGTGCCT-GTAAGACGCGGGGACTTCGGTCCCCGTTTTTCTTTGGAGGGTCAC 1846 ||||||||||| || | |||||||||||||||||||||| || ||||||| Sbjct 332 ACGTCCCCGTGCCTGGTGTGCGACGGGGACTTCGGTCCCCGTTTTCATTCGGAGGGTGTG 273 Query 1847 ATGGAAGGTTACTTCGTTCTATTCGCGATAGCGGGTGCTGGATGGATTCTTTTCTCGTAA 1906 ||||||||||||||||| || ||||||||||||| || ||||||||||||||||||||| Sbjct 272 ATGGAAGGTTACTTCGTGCTGATCGCGATAGCGGGCGCCGGATGGATTCTTTTCTCGTAA 213 Query 1907 GGGTGGTGAGCTATGCCCTGGTCGTTTTTCTTGCGTCGTGCGCGCATCTGGATACGTTTC 1966 ||||||||||||||||||||||| |||||||| |||| || |||||| |||| || || Sbjct 212 GGGTGGTGAGCTATGCCCTGGTCATTTTTCTTTCGTCCTGTGCGCATTTGGACCGGTCTC 153 Query 1967 CGCCTGGCTCGTGTGCTACTGGCTATAGCGCTTGTCTTTGGCCCGACGTTGGGTTTTAGT 2026 ||||||| |||||||||||||||| |||| ||| || |||||||||||||| |||||| Sbjct 152 CGCCTGGGTCGTGTGCTACTGGCTTTAGCTTTTGCCTGTGGCCCGACGTTGGCTTTTAGC 93 Query 2027 GCG 2029 ||| Sbjct 92 GCG 90 >seq29069 Length=736 Score = 398 bits (440), Expect = 3e-107 Identities = 444/587 (76%), Gaps = 7/587 (1%) Strand=Plus/Minus Query 2920 GCCTCAGCAGCAGTTTTGCCAGCAGAACCCGAATGCGGTGGTTTGTAAGGATGACTCCGC 2979 |||||||||||||| |||||||||||||||||||| | || ||| | || ||| Sbjct 615 GCCTCAGCAGCAGTACTGCCAGCAGAACCCGAATGCCGATCAGTGCAAGCAGGATAGCGC 556 Query 2980 TGCAGGCGGTGCTGATTGCAGTGCACCTCCTAGCTGTTCTGGTGACGCGATCAGCTGCGC 3039 || || ||||| |||||||| ||||| | || |||||| |||||||| ||||| Sbjct 555 GAGCGGTGGCGCTGACTGCAGTGCTCCTCCGACGTGCAGTGGTGATGCGATCAGTTGCGC 496 Query 3040 GATTTTGTCTCAGCAGTGGAACACGCGTTGTGAGCTTCAGAAGGCTAACGATTTTTCTGA 3099 |||| | ||||||||||| || | || || || |||||| | ||| || || Sbjct 495 GATTCTCAGTCAGCAGTGGAGTACCAGGTGCGATCTGCAGAAGAGTGTGGATCCGTC-GA 437 Query 3100 TTACGGCGTGA-AGCTGGTTAATG---GTCAGGATCCGATGTCAGGGCAGTTGCCTACGC 3155 || | | | ||| | || | | || | || |||||| | ||| ||||||| |||| Sbjct 436 TTCAGTTGGGGCAGCAGATTCAGGCGGGTAATGACCCGATGGCGGGGAAGTTGCCGACGC 377 Query 3156 CCGCTAAAGCGGATCAGGTGGACCTGAGTTCCAAGCTGTCGAACGTTGATGACATGGGCA 3215 | | | || || |||||||| |||| || ||| | ||||||||||||||||||| Sbjct 376 CTGGTGGTGCAGACCAGGTGGATATGAGCTCGAAGTTTGCGAACGTTGATGACATGGGGT 317 Query 3216 TTGCTGCTCAGTGTCTTGGCAACATTGA-TGTTCCGCTTTCGCTGCCCGGTGGTGGGTGG 3274 | || |||||||| || | | |||| | ||||| | | ||||| ||||||| | Sbjct 316 TCGCGGCTCAGTGCCT-GCCTGATTTGAATATTCCGTTGGCCCTGCCTGGTGGTGCCACG 258 Query 3275 AACCTGCACATCGATACGACGCCGTTGTGTGACATCGGCAAGTTGCTCGGCTATCTCAAC 3334 | |||| ||| || |||| ||||||||||||||||| |||| || ||||||||| Sbjct 257 ACGTTGCATATCTCGACTTCGCCTCTGTGTGACATCGGCAAGCTGCTTGGTTATCTCAAC 198 Query 3335 ATGCTGGGCACGTTGATGCTCTGCGCTTACATGCTCAAGGGGAGTTTCTAAATGCCTTTC 3394 ||||| ||||||||||||| || || ||||||||||||||||||||||||||||| ||| Sbjct 197 ATGCTCAGCACGTTGATGCTGTGTGCGTACATGCTCAAGGGGAGTTTCTAAATGCCATTC 138 Query 3395 GCCGCTCTGTTGGCTTCGGCCATTGTTGGTTTTCTCGCGCAGGCCTGCGTGTCGTTGGTG 3454 |||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||| Sbjct 137 GCCGCTCTGTTGGCCTCGGCCATTGTTGGTTTTCTCGCGCAGGCATGCGTTTCGTTGGTG 78 Query 3455 GGTCGTGTGTTGGTTGCTCTTGGTATTGGCTTCGTGATGTTCACCGG 3501 || |||||| | || || | || ||||| ||||| | |||||||| Sbjct 77 GGCCGTGTGCTTGTCGCGTTGGGCATTGGGTTCGTCAGCTTCACCGG 31 >seq1864375 Length=773 Score = 190 bits (210), Expect = 9e-45 Identities = 134/152 (88%), Gaps = 2/152 (1%) Strand=Plus/Minus Query 5477 TTGACTAGGCGGTAGAGGTGGGGCGTGGGCAGGATCTTCGGCCGTTGTCGCACGGCCAGT 5536 ||||| ||||||||||||||||||||| ||||||| ||| |||||||||||||||||| Sbjct 773 TTGACCTGGCGGTAGAGGTGGGGCGTGGATAGGATCTCCGGTCGTTGTCGCACGGCCAGT 714 Query 5537 GCGGCTGGCGGGACCGAGCAGCGGGTACGACCAGGAGCGT--ATCCATCCCGCGCCACAA 5594 ||||||||||||||||||||||||||||||||||| ||| || || | |||||| Sbjct 713 GCGGCTGGCGGGACCGAGCAGCGGGTACGACCAGGTACGTACATACACAGCTGGCCACAT 654 Query 5595 GCAAACACCCCCTCTCTTGCAAGCCCGCTTTT 5626 ||||||||||||||||||||||||||||||| Sbjct 653 CCAAACACCCCCTCTCTTGCAAGCCCGCTTTT 622 >seq55439 Length=200 Score = 143 bits (158), Expect = 1e-30 Identities = 145/186 (78%), Gaps = 7/186 (4%) Strand=Plus/Plus Query 3525 TGAAGACGTTGTTCATGCAGTACGT--CAACGGTATTGGTTCGATCTCTTCGGTGAGCGT 3582 ||||| | |||||| |||||||||| | || | |||||| | | | | | || Sbjct 20 TGAAGTCATTGTTCCTGCAGTACGTTGCGACTGCC--GGTTCGTTGCCGTGG---AATGT 74 Query 3583 CGTTGGCATCCTCGGCGTGCTGAAGGTTGGTACCTCCATGAACATGATCTTGACGACGTT 3642 || ||||| || |||||| ||||||| || ||| |||||||||||| | |||||| | Sbjct 75 GGTCGGCATTCTTGGCGTGTTGAAGGTGGGGCTCTCGATGAACATGATCCTCACGACGCT 134 Query 3643 GGGGATTCGCGCGTCGTTGTCCGGGTTGAGCGGTGGCTCTATCCGCAAGATGGTTCAGAA 3702 || | || |||||||||||||||||||| |||||||| |||||||||||||||||||| Sbjct 135 GGCTGTGCGTGCGTCGTTGTCCGGGTTGAGTGGTGGCTCGATCCGCAAGATGGTTCAGAA 194 Query 3703 GTGAGG 3708 |||||| Sbjct 195 GTGAGG 200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 22132634984248