Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_008575.1 Length=6662 Score E Sequences producing significant alignments: (Bits) Value seq1864375 125 3e-25 >seq1864375 Length=773 Score = 125 bits (138), Expect = 3e-25 Identities = 93/108 (86%), Gaps = 2/108 (2%) Strand=Plus/Minus Query 6293 GTTGACGCCCGG--AGGGCGCCTGGCGGGACCGAGCAGCGGGTATGACCAGGTACGTACA 6350 |||| ||| ||| || ||| ||||||||||||||||||||||| ||||||||||||||| Sbjct 730 GTTGTCGCACGGCCAGTGCGGCTGGCGGGACCGAGCAGCGGGTACGACCAGGTACGTACA 671 Query 6351 TACAGGGCCGCCCACATACAAACACCCCCTTTCCTGCAAGCCAGCTTT 6398 |||| || | |||||| |||||||||||| || |||||||| ||||| Sbjct 670 TACACAGCTGGCCACATCCAAACACCCCCTCTCTTGCAAGCCCGCTTT 623 Score = 105 bits (116), Expect = 3e-19 Identities = 94/118 (80%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 6512 TGGCGCGCGAGATCAGGCATCTGTACTGGCATATCCGGACACTGCGCCGGGGCTACCAGG 6571 ||||||| ||||||||||| |||||||||||||||| || |||||||| ||| || | Sbjct 119 TGGCGCGGGAGATCAGGCACTTGTACTGGCATATCCGAACGCTGCGCCGTGGCATGCAAG 60 Query 6572 ATGCCGCTCGGCATCGGTACTATCGGAAGATCCGCACGaaaaaaaaaCGCCTGCTAGA 6629 | || ||||| | || ||||| || | |||| | |||||||||||||||||| || Sbjct 59 ACGCGGCTCGTCGCCGTTACTACCGAAGGATCGCTAAGAAAAAAAAACGCCTGCTCGA 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 20707545807064