Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_015297.1 Length=5475 Score E Sequences producing significant alignments: (Bits) Value seq3320 407 5e-110 seq18367 295 2e-76 seq29069 235 2e-58 >seq3320 Length=669 Score = 407 bits (450), Expect = 5e-110 Identities = 389/498 (78%), Gaps = 0/498 (0%) Strand=Plus/Plus Query 2926 CAGCCTGGCAACGGCAAAAGCTTGTACGTGATCGCGCTGGTGGAGGCGATGCGTAAGGCT 2985 || || || ||||| || ||| | || ||||||| ||| ||||||| || |||| Sbjct 2 CAACCAGGTAACGGTAAGAGCCTCTATACGATCGCGACGGTCGAGGCGAAACGACAGGCA 61 Query 2986 GAGAGCCGCCCGGTTTTCTACTACGGCATCCCAGAGCTGACGCTGCCGTGGACGCTCCTG 3045 || || || ||||| ||||| ||||||| || || || ||||| ||||||||| ||| Sbjct 62 GAAAGTCGGCCGGTGTTCTATCACGGCATTCCGGATCTCACGCTTCCGTGGACGAAGCTG 121 Query 3046 GAGGACCCCACGACCTGGCATGAGTGCCCGGAGAAATCGATCATCGTGATCGATGAAGTG 3105 ||||| || || ||| | |||||||| || ||||||||||||||||| ||||| ||| Sbjct 122 GAGGATCCGGGGAAGTGGTACGAGTGCCCTGAAAAATCGATCATCGTGATTGATGAGGTG 181 Query 3106 CAGAAGGTCATGCCGCCGAGGCCGTCGAGCTCGAAGCCGCCGGCGCATGTGGCTCCGCTG 3165 |||||||||||||||||| ||||||| ||||||||||| || || ||| | ||| Sbjct 182 CAGAAGGTCATGCCGCCGCGGCCGTCCAGCTCGAAGCCTCCTCAGCTGGTGTCCGAGCTT 241 Query 3166 GAGGTGCATCGCCATCGAGGCTTCGACCTGTTCTTCATGACGCAGGATCCCAGCCTGGTC 3225 ||| |||||| ||||| |||||||| ||||||||||||||||||||||||||||| || Sbjct 242 GAGACGCATCGGCATCGTGGCTTCGATCTGTTCTTCATGACGCAGGATCCCAGCCTCGTT 301 Query 3226 GACAACCACATCAAGAAGTTGGCCGGCGAGCATGTCCATCTGATTCGGCAGTTTGGCATG 3285 || ||||| | |||||| | || || || ||| |||| ||||||||||||| || Sbjct 302 GATAACCATCTGAAGAAGCTCGCTGGTGAACATATCCACCTGATTCGGCAGTGGGGTCGC 361 Query 3286 CAGCGTGCGGATGTCTTCAAGATGCAGAAGGTCCAGGATCCGACGAACGCCAACCTGAAG 3345 ||| |||||| | ||||||||||||||||| ||||||||||||||||| || || ||| Sbjct 362 CAGAAGGCGGATCTGTTCAAGATGCAGAAGGTGCAGGATCCGACGAACGCGAATCTCAAG 421 Query 3346 CGTGCGTTGCGCACGACGTTCAAGTATCCGAAGGAGGTGTTTGGCTGGTACAAGAGCGCG 3405 || ||||||| || || ||| |||||| ||| |||| || | |||||||||| || Sbjct 422 CGGGCGTTGCACAGCACCTTCCCGTATCCCAAGCAGGTTTTCGACTGGTACAAGTCTGCC 481 Query 3406 GACGCCCACACGCACAAG 3423 || || || ||||||||| Sbjct 482 GATGCTCATACGCACAAG 499 >seq18367 Length=1031 Score = 295 bits (326), Expect = 2e-76 Identities = 499/711 (70%), Gaps = 30/711 (4%) Strand=Plus/Minus Query 590 ATGGCTCAGTGCGTGCAGATCGTCGGTGGTCAGTTTCAGCTCGATAGCACTGCGGCATCG 649 ||||||||||||||||| |||||| |||||||| ||||||| ||| || | | |||||| Sbjct 806 ATGGCTCAGTGCGTGCAAATCGTCAGTGGTCAGCTTCAGCTGGATGGCTCGCCTGCATCG 747 Query 650 TCGTGCACGGGCTATCTGCTGCTGACTGCTGACGAGGTCACGCTGCTGCATGCGATTCCG 709 ||||||||||| |||||| ||||| | ||||| |||||||||||| |||||||| | ||| Sbjct 746 TCGTGCACGGGTTATCTGTTGCTGTCGGCTGATGAGGTCACGCTGTTGCATGCGGTGCCG 687 Query 710 CCGCTGTCCATTCAGGATGGGGCAACCATCTCTGGAGCA--ATCGTCGGTGTGTGGGCGG 767 ||||| || | || || || || | || | ||| || ||||| | ||||| Sbjct 686 CCGCTCTCGGTGAGTGACGGTGC--CCTTATCGGAAGCGCGATGCTCGGTCTTTGGGCTC 629 Query 768 TTGCCTGGGGCTTTCGGGCAGTCGCCCGACtttttttCCAACGTGATGAGGAG--GTTTT 825 | || | || ||||| | || || | | ||||||| |||||| | Sbjct 628 TCGCTTTCATTTTCCGGGCCGCAGCGCGGTCCATCGTTAAACGTGAAGAGGAGTAGGGCA 569 Query 826 ATGAAG------TTCG--GTATC-AAGCGTCTGGCCGTCGTGGCCGCTGGTGTGGGTGGT 876 ||||| ||| || || ||||| ||||| || | || |||| | |||| Sbjct 568 ATGAACAAGTTTTTCCAAGTCTCGAAGCGCCTGGCAGTGGGTGCTGCTGCAGCTGGTGCC 509 Query 877 GCCGTGGCTGCTGGCGCCGCGAATGCTGCG---ATCGATCTTACGGCCGTGACCACTGCG 933 || || |||||| ||| || ||| || |||||| || | ||| | | | Sbjct 508 GCTGTTGCTGCTAACGCGCAGACTGCGCCGTCGATCGATACGTCGTCGGTGGTCGCAACC 449 Query 934 ATCGGCGATG--CTGGTACGGCCGTGGGCACGATCGGCAGTGCCGTGCTGGTGGTGATCG 991 ||| || || ||||| || | || ||||||| ||| ||||||| ||| || Sbjct 448 ATCACCGGTGGTCTGGTT--GCGATCGGTGCGATCGGTCTTGCTGTGCTGGGCGTGTACG 391 Query 992 TTGGCATCGCGGTCTACATGTGGGTGCGTCGTCCCATCAAGTGAC---GCTGCGGGGCGT 1048 |||||| |||||| ||| | || || ||||||||| ||| ||||| | Sbjct 390 GCACGATCGCGATCTACAACTGGATCAAGCGCCCGATCAAGTGATCGAGCT-CGGGGAGA 332 Query 1049 TGTCCCCGCGCCTGGTTAGACGCGGGGGCTCTGGCCCCCGTTTTCTTTGGGAGGCGGTGA 1108 ||||||| ||||||| | ||||| || || |||||||||| || ||||| |||| Sbjct 331 CGTCCCCGTGCCTGGTGTGCGACGGGGACTTCGGTCCCCGTTTTCATTCGGAGGGTGTGA 272 Query 1109 TGGAAGGTTACTTCGTGATGCTCGCGTTTTTGGGGGCGGCATGGATTCTTTTCTCGTGAG 1168 ||||||||||||||||| || ||||| | ||| || | ||||||||||||||||| || Sbjct 271 TGGAAGGTTACTTCGTGCTGATCGCGATAGCGGGCGCCGGATGGATTCTTTTCTCGTAAG 212 Query 1169 GGTGGTGAGCTATGCGCTCGTTCTTTTTCTCGCGTCTTGCGCGCATCTGGGCGG---CCC 1225 ||||||||||||||| || || ||||||| |||| || |||||| ||| | | || Sbjct 211 GGTGGTGAGCTATGCCCTGGTCATTTTTCTTTCGTCCTGTGCGCATTTGGACCGGTCTCC 152 Query 1226 CCCGGGTTCTTGCGTTACTGGTTTTAGCGCTTGTCTGTGGCCCGA-GTTGG 1275 || || || || | |||||| |||||| ||| ||||||||||| ||||| Sbjct 151 GCCTGGGTCGTGTGCTACTGGCTTTAGCTTTTGCCTGTGGCCCGACGTTGG 101 >seq29069 Length=736 Score = 235 bits (260), Expect = 2e-58 Identities = 432/623 (69%), Gaps = 30/623 (5%) Strand=Plus/Minus Query 2090 CTGGCACGTGTACGACCACGACGACACAGCCTCAGACGGATTACTGCAAGGAGAACCCGA 2149 |||| |||||||||| ||||||| ||||||||| | | |||||| || ||||||||| Sbjct 643 CTGGGACGTGTACGAGCACGACGCAGCAGCCTCAGCAGCAGTACTGCCAGCAGAACCCGA 584 Query 2150 GTGCGTCTGTGTGCGCG-AGTTCAGCG--AGCGGTGGTGCGGATTGCTCGTCGCCGCCGA 2206 ||| | |||| | || |||| |||||||| || || ||| | || |||| Sbjct 583 ATGCCGATCAGTGCAAGCAGGATAGCGCGAGCGGTGGCGCTGACTGCAGTGCTCCTCCGA 524 Query 2207 CCTGCAGCGGAGATGCGATCAGCTGCGCGATCCTGAGCCAGCAGTGGCAGACACGGTGCG 2266 | ||||| || ||||||||||| |||||||| || || ||||||||| || |||||| Sbjct 523 CGTGCAGTGGTGATGCGATCAGTTGCGCGATTCTCAGTCAGCAGTGGAGTACCAGGTGCG 464 Query 2267 ATTTGCAGAAGGATGCGGATTCGTCCATCACGCTCGGCAAGCAACTGCAGGCGGGCAACG 2326 || |||||||| || |||| |||| || | | || |||| | |||||||| || | Sbjct 463 ATCTGCAGAAGAGTGTGGATCCGTCGATTCAGTTGGGGCAGCAGATTCAGGCGGGTAATG 404 Query 2327 ATCCTATGGCTGCGCAGCTTCCGACACCGCAGAAGGCCGATCAGAGTCCCATTGCGATCG 2386 | || ||||| | | || | ||||| || || || ||| || || | ||| Sbjct 403 ACCCGATGGCGGGGAAGTTGCCGACGCCTGGTGGTGCAGACCAG-GTGGATATGAGCTCG 345 Query 2387 GAGACAAGTTGTCGAGCGTTGACAACATGGGCATTGCCGAGCAGTGCCTGCAGCCGATCT 2446 ||||| ||| |||||| ||||||| | || | |||||||||| | ||| | Sbjct 344 -----AAGTTTGCGAACGTTGATGACATGGGGTTCGCGGCTCAGTGCCTGC--CTGATTT 292 Query 2447 --------CGTT-----TTCGGTCTATAGCCAC-ACG-TACACGT-TCGACACTGGGCCG 2490 |||| | | | ||||| ||| | || | ||| ||| ||| Sbjct 291 GAATATTCCGTTGGCCCTGCCTGGTGGTGCCACGACGTTGCATATCTCG--ACTTCGCCT 234 Query 2491 ATGTGCAAGCTCGGTCAGGTGCTGGGGGCCTTGAACATCATGAGCACGTTGATGCTCTGC 2550 |||| | |||| || |||| || | ||||| | |||||||||||||| || Sbjct 233 CTGTGTGACATCGGCAAGCTGCTTGGTTATCTCAACATGCTCAGCACGTTGATGCTGTGT 174 Query 2551 GCTTACATGCTGAAGGGGAGTTTCT-GATGCCATTCGTTGCGTTGCTGGCTTCGGCCATC 2609 || |||||||| ||||||||||||| |||||||||| || || |||| |||||||| Sbjct 173 GCGTACATGCTCAAGGGGAGTTTCTAAATGCCATTCGCCGCTCTGTTGGCCTCGGCCATT 114 Query 2610 GTTGGATTTCTCGCGCAGGCTGCCGTCTCGCTGGTCGGGCGCGTGCTGATCGCGCTCGGG 2669 ||||| |||||||||||||| ||| ||| |||| || || ||||| ||||| | || Sbjct 113 GTTGGTTTTCTCGCGCAGGCATGCGTTTCGTTGGTGGGCCGTGTGCTTGTCGCGTTGGGC 54 Query 2670 ATTGGCTTTGTCACCTACAACGG 2692 ||||| || |||| || || ||| Sbjct 53 ATTGGGTTCGTCAGCTTCACCGG 31 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 17012367649600