Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_015586.1 Length=5819 Score E Sequences producing significant alignments: (Bits) Value seq54671 430 5e-117 seq53014 365 2e-97 seq831279 257 6e-65 seq8195 250 9e-63 seq2072404 248 3e-62 seq1973605 248 3e-62 seq835765 199 1e-47 seq53786 136 1e-28 seq52894 134 5e-28 seq54809 127 7e-26 >seq54671 Length=281 Score = 430 bits (476), Expect = 5e-117 Identities = 264/281 (94%), Gaps = 0/281 (0%) Strand=Plus/Plus Query 221 TTGCGGCCTTGCAGGTGTTCTGCTGGTTCTTCGCCGGTCTGGGTCTTGAACTGGATGAAA 280 |||||||| ||||||||||||||||||||||||| || ||||| ||||||||||||||| Sbjct 1 TTGCGGCCCTGCAGGTGTTCTGCTGGTTCTTCGCTGGGCTGGGCCTTGAACTGGATGAAG 60 Query 281 CGGCCGGCGGCGGCCGCTTCTACACGTGGCGAATCAAGATCATCGACGCGGCCAAGAAGT 340 | || |||||||| |||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 61 CAGCAGGCGGCGGTCGCTTCTACATGTGGCGAATCAAGATCATCGACGCGGCCAAGAAGT 120 Query 341 TCGTCGGGATGATCGAACTGGGTGGCGAAAAGTGCCGCCGCGCAGATGGTACGTATACCG 400 |||||||||||||||||||||| |||||| ||||||||||||| ||||| || ||||||| Sbjct 121 TCGTCGGGATGATCGAACTGGGCGGCGAAGAGTGCCGCCGCGCCGATGGCACATATACCG 180 Query 401 CCCGCATCGAGCTAACCGGTGATGGATGCAAGGCGATTAGCGCAGCGCGCTGCGGCCATG 460 ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct 181 CCCGCATCGAGCTAACCGGTGATGGATGCAAAGCGATAGGCGCAGCGCGCTGCGGCCATG 240 Query 461 CGCAGCGGTGGCTGGAGCTTCGAGCGAAGCTCGAAAGCTGC 501 ||||||||||||||||||||||||||||||||||||||||| Sbjct 241 CGCAGCGGTGGCTGGAGCTTCGAGCGAAGCTCGAAAGCTGC 281 >seq53014 Length=230 Score = 365 bits (404), Expect = 2e-97 Identities = 216/225 (96%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 1 ATGGTCGGTGATCGCGCGGTGCTGGCCGGGTCGGGACTCCCCTCGTCTAACAGGGGAGTC 60 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 225 ATGGCCGGTGATCGCGCGGTGCTGGCCGGGTCGGGACTCCCCTCGTCTAACAGGGGAGTC 166 Query 61 AGTGAATTCAGGAACCCCGAGGGAACCCTGACGGTCGGCATTGACTGGTTCTCCGCTTCC 120 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 165 AGTGAATTCAGGAACCCCGAGGGAACCCTGACGGTCGGCATTGATTGGTTCTCCGCTTCC 106 Query 121 ATCGATCTGCGCGCAGCGCTGGACGAGGTTGCGTTCCGTGATGGCGACAGTTTCGAAGAG 180 ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| Sbjct 105 ATCGATCTGCGCGCAGCGCTGGACGAGGTCGCATTCCGTGATGGCGACAGTTTCGAAGAG 46 Query 181 GTCCGCCAGTGGATCGAGTTCTCCCCGGACAATGCCCGCATTGCG 225 ||||||||||||||||||||||||||||| || || || ||||| Sbjct 45 GTCCGCCAGTGGATCGAGTTCTCCCCGGAAAACGCACGTGTTGCG 1 >seq831279 Length=263 Score = 257 bits (284), Expect = 6e-65 Identities = 175/197 (89%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 1010 AATCCTGCACTTCGCCATCGCTGCCGAAGTGGGTCACAGGTGACACAGCAGCGCACTGGC 1069 ||||||||||||||||| |||||||||||||| ||||| ||| ||||||||||||| Sbjct 197 AATCCTGCACTTCGCCAAAGCTGCCGAAGTGGGCAACAGGAGACGTAGCAGCGCACTGGG 138 Query 1070 CCGAAATCGCGGCCGTACAGCCAACCTCAAAGGGGTAACAACACATGAGCATCAAGGTCA 1129 ||| || || ||||||||| ||||||| ||||||||||| |||||||||| ||||||||| Sbjct 137 CCGCAAGCGTGGCCGTACAACCAACCTGAAAGGGGTAACTACACATGAGCGTCAAGGTCA 78 Query 1130 CCGTCCTCAAGAACGAAATTGACGAACGCGGCGGCAGCTTCAAGAACGACGCTGGCGAGA 1189 | ||||| |||||||||||||| |||||||||||||||||||||||||| || ||||||| Sbjct 77 CTGTCCTGAAGAACGAAATTGATGAACGCGGCGGCAGCTTCAAGAACGATGCCGGCGAGA 18 Query 1190 ACGTGGAATACACCACC 1206 |||| || ||||||||| Sbjct 17 ACGTCGAGTACACCACC 1 >seq8195 Length=237 Score = 250 bits (276), Expect = 9e-63 Identities = 197/236 (83%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 231 GCAGGTGTTCTGCTGGTTCTTCGCCGGTCTGGGTCTTGAACTGGATGAAACGGCCGGCGG 290 |||| |||| |||||||||||||| || |||| ||||| ||||||||| ||||| || Sbjct 236 GCAGATGTTTTGCTGGTTCTTCGCTGGGTTGGGCCTTGAGCTGGATGAAGTAGCCGGGGG 177 Query 291 CGGCCGCTTCTACACGTGGCGAATCAAGATCATCGACGCGGCCAAGAAGTTCGTCGGGAT 350 || ||||||||| |||||| ||||||||||| | || | |||||||||||||| || Sbjct 176 AGGGCGCTTCTACCTGTGGCGCGTCAAGATCATCAATGCTGAGAAGAAGTTCGTCGGCAT 117 Query 351 GATCGAACTGGGTGGCGAAAAGTGCCGCCGCGCAGATGGTACGTATACCGCCCGCATCGA 410 |||||| |||||||| || | ||||||||||| ||||| ||||||||||||||||| || Sbjct 116 GATCGAGCTGGGTGGTGATCACTGCCGCCGCGCGGATGGCACGTATACCGCCCGCATTGA 57 Query 411 GCTAACCGGTGATGGATGCAAGGCGATTAGCGCAGCGCGCTGCGGCCATGCGCAGC 466 ||| ||||| ||||| ||||||||| | ||| |||||||||||||||||||||| Sbjct 56 GCTGACCGGCGATGGTTGCAAGGCGGTAGCCGCTGCGCGCTGCGGCCATGCGCAGC 1 >seq2072404 Length=337 Score = 248 bits (274), Expect = 3e-62 Identities = 250/325 (77%), Gaps = 0/325 (0%) Strand=Plus/Minus Query 625 CAGCTGGTGGACGACTACGACAGCGGCGACGGCAAGACGTTCTATGTGGGCGGCAAGAAG 684 ||||| ||||||||||||||||||||||||||||||||||| || || ||||||||||| Sbjct 337 CAGCTTGTGGACGACTACGACAGCGGCGACGGCAAGACGTTTTACGTCGGCGGCAAGAAA 278 Query 685 TCGGAGAAGCAACTGCGCGTCTACGAGAAGGGCAGGGAACAAGGCGACAAGAGTTCGCCG 744 || ||| || |||||||||| ||||| ||| | || | ||||||||||||||||| Sbjct 277 TCCGAGCGTCAGTTGCGCGTCTATGAGAAAGGCCGCGAGCTGGGCGACAAGAGTTCGCCA 218 Query 745 TGGGTGCGCTATGAGGCGCAGTTCCGCAACTCCAATCGCAAGGAACTGCCGCTCGACATT 804 |||||||| || || |||||||||||| || || ||||||||| |||||||||| | Sbjct 217 TGGGTGCGTTACGAAGCGCAGTTCCGCGCTTCAAACCGCAAGGAATTGCCGCTCGATCTA 158 Query 805 CTGCGTGATCCGGCCTCCTACCTGCTCGGGGCTTATCCGGTCCTGTCCTTTCTGCGCTGT 864 || || || || ||| | ||||||||||| || ||||| || ||| ||| |||||||| Sbjct 157 CTCCGCGACCCTGCCGCGTACCTGCTCGGTGCGTATCCCGTGCTGCGCTTCCTGCGCTGC 98 Query 865 GTTGCTACGCGCATCGAAATCACGAAAGCCGCCGTTGAGGCGACGTGGAAGAGCGTCCGT 924 || || | || || || | || ||||| || | | ||||||| || |||| | Sbjct 97 ATTTCTTCCCGTATTGACGTGACCAAAGCGGCAGCGGTTGCGACGTTCAAAAGCGCATGC 38 Query 925 CGCCACATCCGCCGCCAGTACGGCG 949 || || || ||||| ||||||| Sbjct 37 CGTCATTTCAAGCGCCAATACGGCG 13 >seq1973605 Length=205 Score = 248 bits (274), Expect = 3e-62 Identities = 178/205 (87%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 4619 TCGGAGAGGTTCACCACGCTGGCGGCGTTGAAGGACAAGGGTTTCCGTGTTTTGCCGTTT 4678 ||||||||||||||||||||||| |||||||||||||||||||| || | |||||| | Sbjct 205 TCGGAGAGGTTCACCACGCTGGCAGCGTTGAAGGACAAGGGTTTTCGGGGCTTGCCGATC 146 Query 4679 GCGCGGCCGCTCTCCATCATCCGCCGCCATTCCTGCGCCTGCGCAGCAGTGAGCGACAGC 4738 ||||||||||||||||||||||| ||||||||||||||||| || || || |||||| Sbjct 145 GCGCGGCCGCTCTCCATCATCCGGCGCCATTCCTGCGCCTGTGCGGCCAGCAGGGACAGC 86 Query 4739 CAGGCCAGATCTTCGGGCAGCAACTCGCGGCCTTCGGGTGTGACCAGTCGGCCAGCCTTA 4798 || || || || | || || ||||||||||||||| ||||||||||||||||||||| Sbjct 85 CATGCAAGGTCCTGCGGTTCCAGCTCGCGGCCTTCGGGGGTGACCAGTCGGCCAGCCTTA 26 Query 4799 AACGAAAAACCGGCCCAAGGGCCGG 4823 ||||||||||||||||| ||||||| Sbjct 25 AACGAAAAACCGGCCCAGGGGCCGG 1 >seq835765 Length=203 Score = 199 bits (220), Expect = 1e-47 Identities = 170/208 (82%), Gaps = 5/208 (2%) Strand=Plus/Plus Query 1021 TCGCCATCGCTGCCGAAGTGGGTCACAGGTGACACAGCAGCGCACTGGCCCGAAATCGCG 1080 ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| Sbjct 1 TCGCCATCGCTGCCGAAGTGGGTAACAGGTGACACAGCAGCGCATTGGCCCGAAATCGCG 60 Query 1081 GCCGTACAGCCAACCTCAAAGGGGTAACAACACATGAGCATCAAGGTCACCGTCCTCAAG 1140 |||||||| ||||||||||||||||| | | ||| |||||||||| ||| || | Sbjct 61 GCCGTACAACCAACCTCAAAGGGGTA--ATGAAATG---ATCAAGGTCATCGTACTGGAT 115 Query 1141 AACGAAATTGACGAACGCGGCGGCAGCTTCAAGAACGACGCTGGCGAGAACGTGGAATAC 1200 | || |||| || ||||||||||||| |||||| ||||||||| ||| | Sbjct 116 TCGCAGATCAACGAGCGTGGCGGCAGCTTCACCAACGACCGCAACGAGAACGTTGAAGTC 175 Query 1201 ACCACCCGCAAGCAGAAGGCCAAGCTGG 1228 ||||||||||||||| |||||||||| Sbjct 176 ACCACCCGCAAGCAGCGCGCCAAGCTGG 203 >seq53786 Length=269 Score = 136 bits (150), Expect = 1e-28 Identities = 116/143 (81%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 4469 CCGGGGTGTAGGGGCAGCGCCCCTACGGAAGCGCTTCACACGCGCTGGCGAGGTATCGGC 4528 |||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||| Sbjct 76 CCGGGGTGTAGGGGCAGCGCCCCTACGGAAGCGCCTCACACGCGCTGGTATGGTCTCGGC 135 Query 4529 CCCGGTACCGGTAGGACTGCTGCCGGCGGTTCGGCGTCGGGGCCAGCCATCGCCCCCGAT 4588 ||||| |||| ||||| | || || |||||||| || ||||||||| || || Sbjct 136 CCCGGCGCCGGCAGGACACCCGCAACAGGATCGGCGTCAGGACCAGCCATCACCGTGGAA 195 Query 4589 GACCGCCTTTCTCGGCGATGTGC 4611 |||||| || | ||||| ||||| Sbjct 196 GACCGCTTTGCGCGGCGTTGTGC 218 >seq52894 Length=234 Score = 134 bits (148), Expect = 5e-28 Identities = 106/127 (83%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 5054 GCCAGAGCGCACGTTCGGTTGCCGTCGTTGCGCGCTCTGCATGAATCATGGCGATCCAAG 5113 ||||||| || || |||||||||| ||| |||||||| ||||| ||||| |||||||| | Sbjct 234 GCCAGAGGGCCCGCTCGGTTGCCGACGTGGCGCGCTCGGCATGGATCATCGCGATCCAGG 175 Query 5114 TCGGGCCATCGAGCTTCGCCAGCGCGCAAATTTGCGCAATTCGTTCATCTGAGAGCGGCT 5173 | ||||| || |||||||| || |||||||| ||||||||||| ||||| | |||||| Sbjct 174 TGGGGCCGTCCAGCTTCGCAAGGGCGCAAATCTGCGCAATTCGCTCATCGGCCAGCGGCG 115 Query 5174 TCTCGCC 5180 | ||||| Sbjct 114 TATCGCC 108 >seq54809 Length=229 Score = 127 bits (140), Expect = 7e-26 Identities = 105/126 (83%), Gaps = 4/126 (3%) Strand=Plus/Plus Query 5365 CACCCGCCAACGGCACCCCAAGGCCGCTGGCGGGTTTCCTTGGGGCTTGGGGTAGGGGAA 5424 ||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||| Sbjct 102 CACCCGCCACCGGCACCCCAAGGCCGCTGGCGGGTTCTCTTGGGGCTTGGGGCAGGGGAT 161 Query 5425 CAGGGATGATCGA--TCCGCTCATTACCTTCGCGCTGCTGGCCGCCATCGTGGCCGTGTC 5482 || ||||| |||| | ||||| ||||||||||||||| ||||| | ||| | || Sbjct 162 CACGGATGTTCGACGCCATCTCAT--CCTTCGCGCTGCTGGGAGCCATTGCGGCTATCTC 219 Query 5483 CATTGG 5488 |||||| Sbjct 220 CATTGG 225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 18088149721560