Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_021862.1 Length=8576 Score E Sequences producing significant alignments: (Bits) Value seq894772 170 1e-38 seq216247 131 9e-27 seq1864375 120 2e-23 >seq894772 Length=650 Score = 170 bits (188), Expect = 1e-38 Identities = 357/519 (69%), Gaps = 21/519 (4%) Strand=Plus/Plus Query 6963 TGCGCTTTCATGCCGAAATGCCACTGGTTACCTTTCTTGGTCTGGTGCATCTCTGGGTCA 7022 ||||| ||||| ||||| | ||| | | | |||| |||| |||||||||||||| Sbjct 71 TGCGCCTTCATCCCGAAGTACCAGTTGCCGCTCTTCTGGGTCGACTGCATCTCTGGGTCG 130 Query 7023 CGCTTGCCGCTGCCATTCTTGGTCGAACTGGGCGCGGCAATCAGCGAGGCGTCGACCACC 7082 |||| ||| |||| ||||||||||| || || || | ||||||| || || ||| || Sbjct 131 CGCTCACCGGTGCCGTTCTTGGTCGAGCTCGGTGCCGAGATCAGCGTCGCATCCACCGCC 190 Query 7083 GTGCACGTCTTTGAGCAGGTAGCCCTTCGCACTGAGTTGCGCGTTGACGGTCTGCA--GA 7140 || | | | ||||||| ||| ||||| || || | ||||||| | | ||| | Sbjct 191 GTAC-CTGCCTTGAGCATCAGGCCTTTCGCGCTCAGCAGGTCGTTGACCG-CAGCAAGCA 248 Query 7141 AATTGCT-CGGCTAACTGGTGTCGCTCCAGCAAGTGCCGAAAGCGCAGAATGCTGACCCG 7199 ||| | | | || || || ||||||||| || ||||||||||| ||| ||||| Sbjct 249 TCTTGGTGCCGATATCT--TGCGCCTCCAGCAAATGACGAAAGCGCAGGATGGTGACCGC 306 Query 7200 GTCCGGCA----GTCGGCTTATGCCTCCCAGCCCCGCGAATTGCCGATACAACGGCACGT 7255 ||||||| |||||| | | | ||| | |||||||| || |||| |||| || Sbjct 307 ATCCGGCAAGCGGTCGGCAT-CGACGTTCAGTCGCGCGAATTCGCGGTACAGCGGCGTGT 365 Query 7256 CGTACAGCGCCTCTTCCATCGCCACGTCCGTCAGCCCGAACCATTGCTGCAGAAAGTGGA 7315 || ||||||||||||||| |||| || | | | |||||| | ||||| ||||| | Sbjct 366 CGATCAGCGCCTCTTCCATTGCCATATCGCTGAAGCTGAACCAGTTCTGCATGAAGTGAA 425 Query 7316 TGCGCAGCATCGTTTCGACTGGAAACGGCTTCCGACCCGTCGCCTTGACCGGCGCA---T 7372 | |||||||| || |||| | ||| ||| || || || |||| | | | | | Sbjct 426 TCCGCAGCATGGTCTCGATGGCAAAAGGCGGCCTGCCAGT---CTTGGCGCGAGGACTGT 482 Query 7373 GCGGCGCTATCAACGCCAAAAAACGCCTGCCACGGCACCACACGTTCCATCTCA-TCCAG 7431 ||||| | || | ||| | | | |||||| || || || ||||||||| || || Sbjct 483 GCGGCTCGAT-GAGGCCCACCAGTGTGGTCCACGGAACGACGCGCTCCATCTCAGTCAAG 541 Query 7432 AAATACCTGCTTGCGCGTGCGTCGGTTGCTCAGGTCCAG 7470 |||| | |||| | ||||| |||| || |||||| Sbjct 542 AAAT-CGCGCTTCCTGGTGCGCTTGTTGGTCCAGTCCAG 579 >seq216247 Length=635 Score = 131 bits (144), Expect = 9e-27 Identities = 155/206 (75%), Gaps = 3/206 (1%) Strand=Plus/Plus Query 7880 CAGGATGCCGCTCGGCATCGGTACTATCGGAAGATCCGCACGaaaaaaaaaCGCCTGCTA 7939 ||||| || ||||| | | || || |||||||| | || |||||||||||||| Sbjct 5 CAGGACGCGGCTCGTCGCCACTATTACAGGAAGATCGCTAAGAGTAAAAAACGCCTGCTG 64 Query 7940 GATGCAGGCGTTTCGGAACGGGAGGTGCTAGATCTGCTGCTGTGCTGTCGATCA-GCACG 7998 ||||||||||| ||| | || |||||| | ||| ||||| |||| || || ||| ||| Sbjct 65 GATGCAGGCGTCTCGAAGCGAGAGGTGTTGGATTTGCTGATGTGTTGCCGGTCACGCA-A 123 Query 7999 GTGCCGTTTTCGGGCTTGTTTGGACTGCACGCAGCGCTTGCTGTAGGCGCTCCCGAAGTC 8058 ||||| ||||| || ||| |||| |||||||||||| || ||||| || || || | Sbjct 124 TTGCCGGTTTCGTGCCTGTCTGGATTGCACGCAGCGCCTGTTGTAGACGTAGCCAAATCC 183 Query 8059 GGCGAGCTATTTTACATAATACAAAT 8084 || | || |||| |||||| |||||| Sbjct 184 GGTG-GCGATTTAACATAACACAAAT 208 >seq1864375 Length=773 Score = 120 bits (132), Expect = 2e-23 Identities = 83/94 (88%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 7618 AGGGCGCCTGGCGGGACCGAGCAGCGGGTATGACCAGGTACGTACATACAGGGCCGCCCA 7677 || ||| ||||||||||||||||||||||| ||||||||||||||||||| || | ||| Sbjct 716 AGTGCGGCTGGCGGGACCGAGCAGCGGGTACGACCAGGTACGTACATACACAGCTGGCCA 657 Query 7678 CATACAAACACCCCCTTTCCTGCAAGCCAGCTTT 7711 ||| |||||||||||| || |||||||| ||||| Sbjct 656 CATCCAAACACCCCCTCTCTTGCAAGCCCGCTTT 623 Score = 105 bits (116), Expect = 4e-19 Identities = 94/118 (80%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 7824 TGGCGCGCGAGATCAGGCATCTGTACTGGCATATCCGGACACTGCGCCGGGGCTACCAGG 7883 ||||||| ||||||||||| |||||||||||||||| || |||||||| ||| || | Sbjct 119 TGGCGCGGGAGATCAGGCACTTGTACTGGCATATCCGAACGCTGCGCCGTGGCATGCAAG 60 Query 7884 ATGCCGCTCGGCATCGGTACTATCGGAAGATCCGCACGaaaaaaaaaCGCCTGCTAGA 7941 | || ||||| | || ||||| || | |||| | |||||||||||||||||| || Sbjct 59 ACGCGGCTCGTCGCCGTTACTACCGAAGGATCGCTAAGAAAAAAAAACGCCTGCTCGA 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 26689170116560