Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_021866.1 Length=7219 Score E Sequences producing significant alignments: (Bits) Value seq216247 127 9e-26 seq1864375 105 3e-19 >seq216247 Length=635 Score = 127 bits (140), Expect = 9e-26 Identities = 154/206 (75%), Gaps = 3/206 (1%) Strand=Plus/Plus Query 6522 CAGGATGCCGCTCGGCATCGGTACTATCGGAAGATCCGCACGaaaaaaaaaCGCCTGCTA 6581 ||||| || ||||| | | || || |||||||| | || |||||||||||||| Sbjct 5 CAGGACGCGGCTCGTCGCCACTATTACAGGAAGATCGCTAAGAGTAAAAAACGCCTGCTG 64 Query 6582 GATGCAGGCGTTTCGGAACGGGAGGTGCTAGATCTGCTGCTGTGCTGTCGATCA-GCACG 6640 ||||||||||| ||| | || |||||| | ||| ||||| |||| || || ||| ||| Sbjct 65 GATGCAGGCGTCTCGAAGCGAGAGGTGTTGGATTTGCTGATGTGTTGCCGGTCACGCA-A 123 Query 6641 GTGCCGTTTTCGGGCTTGTTTGGACTGCACGCAGCGCTTGCTGTAGGCGCTCCCGAAGTC 6700 ||||| ||||| || ||| |||| |||||||||||| || ||||| || || || | Sbjct 124 TTGCCGGTTTCGTGCCTGTCTGGATTGCACGCAGCGCCTGTTGTAGACGTAGCCAAATCC 183 Query 6701 GGCGAGCTATTTTACATAAGATAAAT 6726 || | || |||| |||||| | |||| Sbjct 184 GGTG-GCGATTTAACATAACACAAAT 208 >seq1864375 Length=773 Score = 105 bits (116), Expect = 3e-19 Identities = 94/118 (80%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 6466 TGGCGCGCGAGATCAGGCATCTGTACTGGCATATCCGGACACTGCGCCGGGGCTACCAGG 6525 ||||||| ||||||||||| |||||||||||||||| || |||||||| ||| || | Sbjct 119 TGGCGCGGGAGATCAGGCACTTGTACTGGCATATCCGAACGCTGCGCCGTGGCATGCAAG 60 Query 6526 ATGCCGCTCGGCATCGGTACTATCGGAAGATCCGCACGaaaaaaaaaCGCCTGCTAGA 6583 | || ||||| | || ||||| || | |||| | |||||||||||||||||| || Sbjct 59 ACGCGGCTCGTCGCCGTTACTACCGAAGGATCGCTAAGAAAAAAAAACGCCTGCTCGA 2 Score = 104 bits (114), Expect = 1e-18 Identities = 71/80 (89%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 6273 GACCGAGCAGCGGGTATGACCAGGTACGTACATACAGGGCCGCCCACATACAAACACCCC 6332 |||||||||||||||| ||||||||||||||||||| || | |||||| |||||||||| Sbjct 702 GACCGAGCAGCGGGTACGACCAGGTACGTACATACACAGCTGGCCACATCCAAACACCCC 643 Query 6333 CTTTCCTGCAAGCCAGCTTT 6352 || || |||||||| ||||| Sbjct 642 CTCTCTTGCAAGCCCGCTTT 623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 22448279736212