Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01] 149,134 sequences; 10,494,855,601 total letters Query= NC_001331.1 Length=7349 Score E Sequences producing significant alignments: (Bits) Value seq51305 96.9 2e-16 seq81104 78.8 4e-11 >seq51305 Length=2180 Score = 96.9 bits (106), Expect = 2e-16 Identities = 71/82 (87%), Gaps = 2/82 (2%) Strand=Plus/Minus Query 6886 GGTCAAGGGCCGCGCTCCCGGCTCGTCGG--AACAGCTTCACCGTTCCGGCGAACGGAAG 6943 ||||| ||||||||| ||||||||||||| || |||||||| |||||||||||| | Sbjct 229 GGTCAGGGGCCGCGCCCCCGGCTCGTCGGGGAAGCGCTTCACCTCCCCGGCGAACGGAGG 170 Query 6944 CACGGGCGGAGCGCACCCTTGA 6965 |||||||| ||||||||||||| Sbjct 169 CACGGGCGAAGCGCACCCTTGA 148 >seq81104 Length=2477 Score = 78.8 bits (86), Expect = 4e-11 Identities = 115/157 (73%), Gaps = 8/157 (5%) Strand=Plus/Minus Query 6886 GGTCAAGGGCCGCGCTCCCGGCTCGTCGGAACAGCTTCACCGTTCCGGCGAACGGAAGCA 6945 ||||| ||||||||| ||||||||||||| || || |||||||||||| ||| Sbjct 1467 GGTCAGGGGCCGCGCCCCCGGCTCGTCGGTGAGGCA----CGAGCCGGCGAACGGAGGCA 1412 Query 6946 CGGGCGGAGCGCACCCTTGAACGCCTCCCCCCTGAAACAGCCTCCG-CTTGGGAGTGTGG 7004 |||||| ||||||||||||| | | || | || || ||||| || ||||| | || Sbjct 1411 CGGGCGAAGCGCACCCTTGACCAGCCCCGATCAAAATCACTCTCCGCCTGGGGAGCG-GG 1353 Query 7005 GGCAGCTTCTCCGCCCCGCGCTCCCGAGCACTCGGCG 7041 | ||||| | | |||||| | ||| || |||| || Sbjct 1352 GAGAGCTT-TACCCCCCGCAC-CCCTGGCCCTCGCCG 1318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 23362337790088