Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_001332.1 Length=6744 Score E Sequences producing significant alignments: (Bits) Value seq461619 248 4e-62 seq235330 161 4e-36 seq429861 140 1e-29 seq4019 91.5 6e-15 >seq461619 Length=331 Score = 248 bits (274), Expect = 4e-62 Identities = 250/325 (77%), Gaps = 0/325 (0%) Strand=Plus/Minus Query 148 GATGAGTGTGGCACGTGGTTTAATTCCCGCAACTGGAGTGATAAAAGTCGCCAGCCTGTT 207 ||||| ||||| || |||||||||||||| ||| | || || | | || |||||| Sbjct 325 GATGAATGTGGTACTTGGTTTAATTCCCGTTCATGGGGCGACAAGGATAGACAACCTGTT 266 Query 208 ATAGACTGGTTTTTACATGCCCGTAAATTAGGCTGGGATGTAATTTTTATTATTCAGGAT 267 || || |||||||||||||||||||||||||| ||||| | || ||| | || |||||| Sbjct 265 ATTGATTGGTTTTTACATGCCCGTAAATTAGGTTGGGACATCATATTTCTCATCCAGGAT 206 Query 268 ATTTCCCTGATGGATAAGCAGGCACGCGAGGCTTTAGCCGAACATGTTGTTTATTGCCGT 327 ||||| | |||||||| ||||| || ||| | || ||||||||||||||||| ||| Sbjct 205 GTTTCCATCATGGATAAACAGGCGCGATTAGCTCTTGCTGAACATGTTGTTTATTGTCGT 146 Query 328 CGATTAGATAAATTAAATATACCTATCATTGGTGGTTTAATTTCGGTTCTTTCAGGTGGT 387 |||| |||||||||||||||||||| ||||| | | || ||||||||||| Sbjct 145 CGATCGGATAAATTAAATATACCTATTATTGGCTCTCTTATGAATCTTCTTTCAGGTTCA 86 Query 388 AGATTGCCATTACCGAAAGTTCACTTTGGTATTGTTAAATATGGTGATAATCCTCAGTCA 447 | || | ||||| || || || |||||||||||||||||||| || ||| | ||| Sbjct 85 CGTTTTTCTTTACCAAAGGTACATTTTGGTATTGTTAAATATGGCGACAATGTAAATTCA 26 Query 448 TTAACTGTAGATAAATGGATTTATA 472 | ||||| ||||||||||| |||| Sbjct 25 ATCACTGTTGATAAATGGATATATA 1 >seq235330 Length=15159 Score = 161 bits (178), Expect = 4e-36 Identities = 239/335 (71%), Gaps = 3/335 (1%) Strand=Plus/Minus Query 1963 CGCCGGTTGTTATGGGAAATGGTCAGTTAGTTCTCACCATCGATACTAAAGCCGACTCTC 2022 |||| |||| ||||||||| | ||| | || || || ||||| | ||||| || || | Sbjct 1472 CGCCTGTTGACATGGGAAATTGGCAGCTTGTACTGACAATCGACAGCAAAGCTGATTCAC 1413 Query 2023 TCAGCAATCAGGCGATTGCCTCTGACATCATTACCAATCAGCGCCAGATACAAACCACCG 2082 | ||||| | | || ||| |||| || |||||||| ||||| || ||||||| Sbjct 1412 TTAGCAACGATAACAACACCAGTGAAATCACCACAAATCAGCGTCAGATTCAGACCACCG 1353 Query 2083 TTCAGATTAAAGACGGTCAGACCCTGCTTTTAGGCGGCCTGATTAGCTCTAACCAGTTC- 2141 || ||||||||||||| ||||| ||||| | ||||| || | | | ||| || | Sbjct 1352 TTAAGATTAAAGACGGGCAGACGTTGCTTCTTGGCGGGCTCACGGACACAAAC-AGCACT 1294 Query 2142 GACAGCGATCGTTCTGTGCCTTTTATGTCGAAGATTCCTTTAATCGGCTGGCTTTTCCGC 2201 ||||| ||||||| | || | | || ||||| | |||||||||||||||||| Sbjct 1293 GACAGTAATCGTTCAATACCCTGGTTCGAAAATATTCCCGTCATCGGCTGGCTTTTCCGC 1234 Query 2202 AGCCATTCAGACTCGAAAGATGATCGCACTATGTTCGTTTTGCTTACTGCTCACGTTATC 2261 |||||||| || || |||||||| ||||||||| |||| || |||||||||| Sbjct 1233 AGCCATTCCGATTCCGTTACCGATCGCACGATGTTCGTTCTGCTGACCACTCACGTTATT 1174 Query 2262 AGGGCGCTTTGAGGGTGCGGGGTAGGTGCGTTAGC 2296 | | ||| ||| ||| ||| ||||||| ||| Sbjct 1173 CGCGAGCTGTGAAATTGCCAGGT-GGTGCGTAAGC 1140 >seq429861 Length=268 Score = 140 bits (154), Expect = 1e-29 Identities = 167/224 (75%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 5329 GGTGATATGCAACGTTCTGTACCAGATGAAGAACCTTCTGAACAAACGCCAGAAGAAATC 5388 || ||||| ||||| || | || |||||| |||||| |||| |||||||||||||| Sbjct 231 GGCGATATTCAACGCACTATTCCCGATGAAACACCTTCCGAACCTACGCCAGAAGAAATT 172 Query 5389 TGTGAAGCAAAACCTCCTATTGATGGCGTCTTTAATAACGTCTCTAAGGGTGACGAAGGA 5448 |||||||||||||| ||| |||| || || ||||| |||| | ||| || Sbjct 171 TGTGAAGCAAAACCACCTGAAAATGGTGTGTTCAATAATGTCT---ATTCTGATTCTGGT 115 Query 5449 GGCTTTTATATTAATTATAATGGCTGCGAATATGAGGCAACTGGCGTCACTGTTTGCCAG 5508 | ||||||| |||||||||||||||| || || || |||||||| | |||||||||| Sbjct 114 GATCGTTATATTTATTATAATGGCTGCGAGTACGAAGCCACTGGCGTTATTGTTTGCCAG 55 Query 5509 AATGATGGAACTGTCTGTGCCTCCTCCGCTTGGAAGCCAACTGG 5552 | |||| | |||| || | || | || ||||||||||| || Sbjct 54 AGTGATAGCTCTGTTTGCG-CTGCAACG--TGGAAGCCAACCGG 14 >seq4019 Length=2207 Score = 91.5 bits (100), Expect = 6e-15 Identities = 89/112 (79%), Gaps = 2/112 (2%) Strand=Plus/Plus Query 4800 ACTCAGGCAACTGATCTCATTGATCAGACGTGGCCTGTTGTAACTAGC-GTTGCCGTTGC 4858 |||||||| | |||||| |||| | | ||||||||||| | | || |||| || || Sbjct 1996 ACTCAGGCCAATGATCTTATTGCTAAAGTCTGGCCTGTTGT-AGTCGCTGTTGTCGGCGC 2054 Query 4859 TGGTCTGGCAATTCGTCTTTTCAAGAAATTCTCTTCTAAAGCTGTTTAATAT 4910 | |||| || |||||||||||||| || ||||| || ||||||||||||||| Sbjct 2055 TAGTCTAGCTATTCGTCTTTTCAAAAAGTTCTCATCAAAAGCTGTTTAATAT 2106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 21345044119152