Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_001954.1 Length=8454 Score E Sequences producing significant alignments: (Bits) Value seq4019 255 3e-64 seq461619 179 2e-41 seq235330 89.7 3e-14 >seq4019 Length=2207 Score = 255 bits (282), Expect = 3e-64 Identities = 523/765 (68%), Gaps = 28/765 (4%) Strand=Plus/Plus Query 7681 CTGACGGTGCAATTATTAAAGAAGTACATATCACCTCGAACAGGGCGGCAGGTAAGGGGA 7740 |||| |||||||||||| || |||||||||| || || | | | || || || | Sbjct 608 CTGATGGTGCAATTATTCGTGAGCTACATATCACATCAAATAAATCCACTGGAAAAGGCA 667 Query 7741 ATGAAGATGACTATATTTCAGGTTTATCTACGCAACCCTACAGGAACAGCGTTCCACGGC 7800 |||| ||||| ||||| ||||| ||||| |||||||| || || || || ||||| | | Sbjct 668 ATGAGGATGAATATATATCAGGATTATCAACGCAACCTTATAGAAATAGTGTTCCTAGAC 727 Query 7801 TACACTCCAATGGAAAATCCGTTGACTGGCTGTCTAAAAAAGGCAATGTAAACCTCATAT 7860 | || ||||| || || ||||| ||| |||||||||| || ||||| ||| | |||| Sbjct 728 TTCATAGTAATGGTAAGTCAGTTGATTGGTTGTCTAAAAAGGGTAATGTTAACTTAATAT 787 Query 7861 ATCCAACGGTTTACAATAAAGCTCATGAAATGGAACTCCATTCTTTGACAAAGATAAAGA 7920 | || || ||||| ||||||| |||||| | | | || || ||| || |||| | Sbjct 788 ACCCGACTGTTTATAATAAAGGGCATGAACTTTCATTACACTCCCTGAATAAATTAAAAA 847 Query 7921 A------TCGTT---TTTCCGAACAATCTCGGGAATA-CAATTACCTACTCGATATTATA 7970 | | ||| ||| || ||| | | ||| |||| | || | || ||| Sbjct 848 ATAAATTTGGTTCTGATTCAGAGCAA-GTAAAGCATATCAATAAAGTAATTGA----ATA 902 Query 7971 TCTTTCTGCAAAGAGAATGGGGTCGTAAGGTTTGAGCAAAAGCTGAAATCCAGATTTTTG 8030 | ||| |||| ||||| | || | ||||| ||||| | ||||| | | ||| Sbjct 903 T-----TGCGAAGAAAATGGAATAGTTCGTTTTGAACAAAAATTAAAATCACGTTACTTG 957 Query 8031 CAAAAGAATGCGCTCAATTACTGGGGGCTTTCTGATTATTCCATTTTAAATAAGTTACAT 8090 || || || || | ||||||||| |||||||| ||||| ||||| |||||||| Sbjct 958 CAGAAAAACAATCTTTTGTTCTGGGGGCTATCTGATTACTCCATATTAAACGAGTTACAT 1017 Query 8091 TCTGATTTTCTTGAACTT-GATAAAAAGTTATCGGTGAATGCTATGGACTTTGAAACTAT 8149 | | || ||||| || ||| |||| ||||||||||||||||||||||||||||||| Sbjct 1018 AAT-ACATTTTTGAATTTAGATGAAAAACTATCGGTGAATGCTATGGACTTTGAAACTAT 1076 Query 8150 CAGTGATCATCT--TGTAAGTAGTGGGGTTGTTGAAACCACCCGTGCAGCAAATACTACC 8207 || || ||| | | | | || || ||||||| || | || || ||||| || Sbjct 1077 AAGCGAACATTTAATCTCA-CAG-GGTATTGTTGATACGGTAAGAGCGGCTAATACAACG 1134 Query 8208 GCAATGTATGCAATACAGTGGTTTCACGGTCATGTATTTGACTTCAACAAAAAAC-AGGT 8266 | |||||||| || || |||||||| ||||| || || || |||| | || Sbjct 1135 TCTATGTATGCCATTCAATGGTTTCATGGTCACACTTTCGA-TTTTTCAAAGTCCGCTGT 1193 Query 8267 TCAGACACATCGGGCGCGGTTACGAAAAATTGGTATCGACATTGCGCAGAAATGCAATGT 8326 ||| || || || || | ||| |||||||||||| ||||| ||| |||||||| Sbjct 1194 AAAGATTCACCGAGCAAGGCTTAGAAGAATTGGTATCGATATTGCTCAGCGCTGCAATGT 1253 Query 8327 TTCTAAATTCTCTCCTGTGATTGTGAAACAAACACGGGAAATTAAGGTGCAGGAGTGCGT 8386 |||| || || ||||| || | | || | |||||||| || | || || || Sbjct 1254 AGCTAAGTTTTCACCTGTTATCACCAGAGAAGTCAGAGAAATTAAAGTTAAAGATTGTGT 1313 Query 8387 TGCACCATCATGGTATGTACGTCCGTCACATTTACGCGTTGCATA 8431 | |||||||||||| | || ||||||||| ||||| || Sbjct 1314 TATTCCATCATGGTATTTGAAGCCATCACATTTAAAAGTTGCTTA 1358 >seq461619 Length=331 Score = 179 bits (198), Expect = 2e-41 Identities = 216/294 (73%), Gaps = 0/294 (0%) Strand=Plus/Minus Query 2757 GTTCTTGATGAATGTGGGACATGGTTTAACTCACGCTCATGGGCTGATAAAGAAAGACAG 2816 || |||||||||||||| || |||||||| || || ||||||| || || || ||||| Sbjct 331 GTGCTTGATGAATGTGGTACTTGGTTTAATTCCCGTTCATGGGGCGACAAGGATAGACAA 272 Query 2817 TCCGTAATTAACTGGTTTTTACATGCCAGAAAACTGGGCTGGGATATTATTTTTCTTATT 2876 | || ||| | ||||||||||||||| | ||| | || ||||| || || ||||| || Sbjct 271 CCTGTTATTGATTGGTTTTTACATGCCCGTAAATTAGGTTGGGACATCATATTTCTCATC 212 Query 2877 CAGGATTTATCCATCATGGATAAGCAAGCTCGTGTGGCACTGGCAGAGCATGTCGTTTAT 2936 |||||| | |||||||||||||| || || || | || || || || ||||| |||||| Sbjct 211 CAGGATGTTTCCATCATGGATAAACAGGCGCGATTAGCTCTTGCTGAACATGTTGTTTAT 152 Query 2937 TGCCGACGCCTCGATAAAATCACAATTCCATTTATTGGCTCAATTTATAGTGTAATAACG 2996 || || || |||||| | | || || |||||||||| || | | | | | Sbjct 151 TGTCGTCGATCGGATAAATTAAATATACCTATTATTGGCTCTCTTATGAATCTTCTTTCA 92 Query 2997 GGATCAAAACTTCCGCTACCAAAAGTACATGTCGGGATTGTTAAATATGGTGAC 3050 || ||| || | ||||||| |||||| | || |||||||||||||| ||| Sbjct 91 GGTTCACGTTTTTCTTTACCAAAGGTACATTTTGGTATTGTTAAATATGGCGAC 38 >seq235330 Length=15159 Score = 89.7 bits (98), Expect = 3e-14 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 7647 CAGGCAAAAGAGAATGAGAAAGCACCTCTTGTTGCTGACGGTGCAATTATTAAAGAAGTA 7706 ||| |||| || || || || || || || | | ||||| || ||| | || || Sbjct 1648 CAGACAAATGAAAACGAAAAGGCTTCTGTTTTATCGGACGGGGCTTATATACTATAAATA 1589 Query 7707 CATATCACCTCGAACAGGGCGGCAGGTAAGGGGAATGAAGATGACTATATTTCAGGTTTA 7766 ||||| | || || | | | ||| ||||| ||||||||||| ||||| || || || Sbjct 1588 CATATAATTTCAAATAAATCAGTAGGAAAGGGCAATGAAGATGAGTATATCTCTGGATTG 1529 Query 7767 TCTACGCAACCCTACAGGAACAGCGTTCCACGGCTACACTCCAATGGAAAATCCGTTGAC 7826 ||||| ||||| ||| | |||| ||| || || |||||| ||||||||||| || | | Sbjct 1528 TCTACTCAACCTTACCGTAACATCGTACCTCGACTACACAGTAATGGAAAATCTGTCGCC 1469 Query 7827 TG 7828 || Sbjct 1468 TG 1467 Score = 82.4 bits (90), Expect = 4e-12 Identities = 53/58 (91%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 5052 CGCGAAGCGGTTCGGGGTTCTGTGACACCCGAACTTTACCGTGGTTTCCCACGGTATT 5109 |||||| |||||||||||||||||||| |||||||||||||| ||||||||||| || Sbjct 1807 CGCGAAACGGTTCGGGGTTCTGTGACAGTCGAACTTTACCGTGATTTCCCACGGTTTT 1750 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 26786312074392