Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_002014.1 Length=6883 Score E Sequences producing significant alignments: (Bits) Value seq461619 230 1e-56 seq235330 167 1e-37 seq429861 134 6e-28 seq4019 80.6 1e-11 >seq461619 Length=331 Score = 230 bits (254), Expect = 1e-56 Identities = 254/333 (76%), Gaps = 4/333 (1%) Strand=Plus/Minus Query 3993 GTTCTTGATGAATGTGGTACTTGGTTTAACTCAAGAAACTGGAGCGATAAATCAAGGCAG 4052 || |||||||||||||||||||||||||| || | ||| |||| || || || Sbjct 331 GTGCTTGATGAATGTGGTACTTGGTTTAATTCCCGTTCATGGGGCGACAAGGATAGACAA 272 Query 4053 CCTGTTATTGATTGGTGTTTACATGCACGTAAATTAGGTTGGGATATTATCTTTATTATT 4112 |||||||||||||||| ||||||||| ||||||||||||||||| || || ||| | || Sbjct 271 CCTGTTATTGATTGGTTTTTACATGCCCGTAAATTAGGTTGGGACATCATATTTCTCATC 212 Query 4113 CAGGATATTTCTCTGATGGATAAGCAAGCGCGTGATGCTTTGGCTGAGCACGTTGTCTAT 4172 |||||| |||| | |||||||| || ||||| ||| | ||||| || ||||| ||| Sbjct 211 CAGGATGTTTCCATCATGGATAAACAGGCGCGATTAGCTCTTGCTGAACATGTTGTTTAT 152 Query 4173 TGTCGTCGCTTGGATAAATTGAATATACCAATCATCGG-TGGGTTA-ATATCTGTATTAT 4230 |||||||| | ||||||||| |||||||| || || || | ||| |||| | || | Sbjct 151 TGTCGTCGATCGGATAAATTAAATATACCTATTATTGGCTCTCTTATGAATCT-TCTT-T 94 Query 4231 CTGGTGGTAGATTACCGTTACCAAAAGTGCATTTTGGTATTGTTAAATATGGTGATAATC 4290 | ||| | || | |||||||| || ||||||||||||||||||||||| || ||| Sbjct 93 CAGGTTCACGTTTTTCTTTACCAAAGGTACATTTTGGTATTGTTAAATATGGCGACAATG 34 Query 4291 CTCAATCTTTAACTGTCGATAAATGGGTTTATA 4323 | || | ||||| ||||||||| | |||| Sbjct 33 TAAATTCAATCACTGTTGATAAATGGATATATA 1 >seq235330 Length=15159 Score = 167 bits (184), Expect = 1e-37 Identities = 237/332 (71%), Gaps = 1/332 (0%) Strand=Plus/Minus Query 5838 TGACGCCTGTTGTCATGGGTAATGGTCAGCTTGTTCTTACCATTGATACCAAAGCTGACT 5897 || ||||||||| |||||| ||| | |||||||| || || || || | ||||||||| | Sbjct 1475 TGTCGCCTGTTGACATGGGAAATTGGCAGCTTGTACTGACAATCGACAGCAAAGCTGATT 1416 Query 5898 CCCTAACCAGTCAAATGACTGCTAGCGACATCATTACTAATCAGCGTCATATGCAAACGA 5957 | || | || | | | | || || |||| || ||||||||||| || || || | Sbjct 1415 CACTTAGCAACGATAACAACACCAGTGAAATCACCACAAATCAGCGTCAGATTCAGACCA 1356 Query 5958 CAGTGCAGATAAAAGACGGTCAGACGCTTTTGCTTGGTGGTCTTATCGATTCCAATACAA 6017 | || |||| |||||||| |||||| | | ||||| || || | || | || | | Sbjct 1355 CCGTTAAGATTAAAGACGGGCAGACGTTGCTTCTTGGCGGGCTCACGGACACAAACAGCA 1296 Query 6018 CTGACGGTAATCGCTCTGTACCTTGGTTTGAAAGCGTACCTGTGATTGGCTGGTTGTTCC 6077 ||||| ||||||| || |||| ||||| |||| | || || || |||||| | |||| Sbjct 1295 CTGACAGTAATCGTTCAATACCCTGGTTCGAAAATATTCCCGTCATCGGCTGGCTTTTCC 1236 Query 6078 GCAGCCATAGTGATTCGCATAACGAAAGAACTATGTTTGTTCTCCTTACCGCGCACGTTA 6137 |||||||| ||||| || ||| | || ||||| ||||| || ||| | ||||||| Sbjct 1235 GCAGCCATTCCGATTCCGTTACCGATCGCACGATGTTCGTTCTGCTGACCACTCACGTTA 1176 Query 6138 TTAAGGCGCTTTGAGGCTGCCGGGTAGGTGCG 6169 || | ||| ||| |||| ||| |||||| Sbjct 1175 TTCGCGAGCTGTGAAATTGCCAGGT-GGTGCG 1145 >seq429861 Length=268 Score = 134 bits (148), Expect = 6e-28 Identities = 165/224 (74%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 2436 GGTGATATACAACGTTCTGTACCAGATGAAGAACCTTCTGAACAAACGCCAGAAGAAATT 2495 || ||||| ||||| || | || |||||| |||||| |||| ||||||||||||||| Sbjct 231 GGCGATATTCAACGCACTATTCCCGATGAAACACCTTCCGAACCTACGCCAGAAGAAATT 172 Query 2496 TGTGAAGCCAAACCTCCTATTGATGGCGTTTTTAATAACGTCTTTAAGGGTGACGAAGGA 2555 |||||||| ||||| ||| |||| || || ||||| |||| | ||| || Sbjct 171 TGTGAAGCAAAACCACCTGAAAATGGTGTGTTCAATAATGTCT---ATTCTGATTCTGGT 115 Query 2556 GGCTTTTATATTAATTATAATGGCTGTGAATATGAGGCAACTGGCGTTACTGTTTGCCAG 2615 | ||||||| ||||||||||||| || || || || |||||||||| |||||||||| Sbjct 114 GATCGTTATATTTATTATAATGGCTGCGAGTACGAAGCCACTGGCGTTATTGTTTGCCAG 55 Query 2616 AATGATGGAACTGTCTGTTCCTCCTCCGCTTGGAAGCCAACAGG 2659 | |||| | |||| || | | | | ||||||||||| || Sbjct 54 AGTGATAGCTCTGT---TTGCGCTGCAACGTGGAAGCCAACCGG 14 >seq4019 Length=2207 Score = 80.6 bits (88), Expect = 1e-11 Identities = 94/127 (74%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 1889 GCAATGGACAGCCTTAAAACTCAGGCTATTGATCTCATTTCTCAGACTTGGCCTGTTGTA 1948 || |||||| ||| |||||||| | |||||| ||| || | |||||||||||| Sbjct 1978 GCTATGGACTCTCTTTTGACTCAGGCCAATGATCTTATTGCTAAAGTCTGGCCTGTTGTA 2037 Query 1949 ACGACTGTTGTAGTTGCTGGTCTTGTAATTCGCCTCTTTAAGAAGTTCTCTTCTAAAGCT 2008 ||||||| | ||| |||| | ||||| || || || |||||||| || |||||| Sbjct 2038 GTCGCTGTTGTCGGCGCTAGTCTAGCTATTCGTCTTTTCAAAAAGTTCTCATCAAAAGCT 2097 Query 2009 GTTTAAT 2015 ||||||| Sbjct 2098 GTTTAAT 2104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 21787346017268