Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_001420.2 Length=5577 Score E Sequences producing significant alignments: (Bits) Value seq11651 282 1e-72 >seq11651 Length=504 Score = 282 bits (312), Expect = 1e-72 Identities = 376/511 (74%), Gaps = 15/511 (3%) Strand=Plus/Plus Query 1768 GCAACCTTTCGCCATCATCTCAACG-TGCTGGCAAAAACTGACGCCCTTGACGAGGAGAA 1826 || |||||||||||||| || |||| | ||| ||||||||||||| | || |||||||| Sbjct 1 GCGACCTTTCGCCATCAACT-AACGATTCTGTCAAAAACTGACGCGTTGGATGAGGAGAA 59 Query 1827 ATACTTAAATATGTTAGGTGCTCTCCTCAAGGACTGGTTCCGGTACGAAGAACATTTCGT 1886 | | |||||| | || | || ||||||||||||| | || || |||||| || Sbjct 60 GTGGCTTAATATGCTTGGCACGTTCGTCAAGGACTGGTTTAGATATGAGTCACATTTTGT 119 Query 1887 GCATGGTAAACAATCAATGCTTGACATACTGAAAGAACGTGGCCTATTATCCACATCGTC 1946 ||||||| | | || | ||||||| | ||||| ||||| || |||| || Sbjct 120 TCATGGTAGAGATTCTCTTGTTGACATTTTAAAAGAGCGTGGATTACTATCTGAGTCCGA 179 Query 1947 AACTGACACAAACCACAAA--GGAAACTGAAATGTCTAAATCAA---AC-GAATCTGCTG 2000 ||| |||||| || || || ||||| | | |||| || ||| | | Sbjct 180 TGCTGTTC--AACCACTAATAGGTAA--GAAATCA-TGAGTCAAGTTACTGAACAATCCG 234 Query 2001 TAGCCTTTCAAACTGCTATCGCTTCTATCAAACTTATTCAAGCATCTTCTGTTCTTGACT 2060 || || || || ||| | || ||||| || || ||||| || ||| | ||| | || | Sbjct 235 TACGTTTCCAGACCGCTTTGGCCTCTATTAAGCTCATTCAGGCTTCTGCCGTTTTGGATT 294 Query 2061 TGACAGAGGACGATTTTGACTTCTTAACTCGCGACCGTGTCTGGATTGCTACCGACCGTT 2120 | || || || ||||| || || | || | || || ||||||||||| ||||| | Sbjct 295 TAACCGAAGATGATTTCGATTTTCTGACGAGTAACAAAGTTTGGATTGCTACTGACCGCT 354 Query 2121 CACGCGCTCGCCG-TGCTATCGAGGCTTGCGTATATGGAACACTGGACTTTGTCGGGTAT 2179 | || ||||| || ||| | ||||||||||| ||||| || ||||||||||| || || Sbjct 355 CTCGTGCTCGTCGCTGC-GTTGAGGCTTGCGTTTATGGTACGCTGGACTTTGTAGGATAC 413 Query 2180 CCTCGCTTTCCTGCTCCTGTTGAGTTTATTTCTGCCGTCATTGCTTATTACGTTCATCCC 2239 |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| Sbjct 414 CCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTCATTGCTTATTATGTTCATCCC 473 Query 2240 GTTAACATCCAAACCGCCTGTCTCATCATGG 2270 || ||||| ||||| |||||||||||||||| Sbjct 474 GTCAACATTCAAACGGCCTGTCTCATCATGG 504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 17732113869580