Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_007856.1 Length=5486 Score E Sequences producing significant alignments: (Bits) Value seq11651 327 4e-86 >seq11651 Length=504 Score = 327 bits (362), Expect = 4e-86 Identities = 382/508 (75%), Gaps = 12/508 (2%) Strand=Plus/Plus Query 1774 GCAACCTTTCGCCATCATCTCAACG-TGGTAGCAAAGACTGACGCGCTTGATGAAGAAAA 1832 || |||||||||||||| || |||| | | |||| ||||||||| | ||||| || || Sbjct 1 GCGACCTTTCGCCATCAACT-AACGATTCTGTCAAAAACTGACGCGTTGGATGAGGAGAA 59 Query 1833 ATGGCTCAATATGATGGGCGCTCTTCTTAAGGACTGGTTCCGCTATGAACAACATTTCGT 1892 ||||| |||||| | ||| | | | ||||||||||| | ||||| |||||| || Sbjct 60 GTGGCTTAATATGCTTGGCACGTTCGTCAAGGACTGGTTTAGATATGAGTCACATTTTGT 119 Query 1893 ACATGGCAAAGAATCAATGCTTGACATTCTAAATGAACGTGGCCTATTATCCACCTTGCC 1952 ||||| | ||| || | |||||||| |||| || ||||| || |||| | | Sbjct 120 TCATGGTAGAGATTCTCTTGTTGACATTTTAAAAGAGCGTGGATTACTATCTGAGT---C 176 Query 1953 AAATG--GCTTAACTTACAA-AGGAATCAAAA-ATGA---AAGCAAATGAGAACGCAGTA 2005 ||| | | ||| || ||| | ||| |||| ||| | ||| | | ||| Sbjct 177 CGATGCTGTTCAACCACTAATAGGTAAGAAATCATGAGTCAAGTTACTGAACAATCCGTA 236 Query 2006 GCCTTTCAAACCGCTATTGCCTCCATCAAACTTATTCAGGCATCTTCTGTTCTTGACCTG 2065 || || |||||| | ||||| || || || |||||||| ||| | ||| | || | Sbjct 237 CGTTTCCAGACCGCTTTGGCCTCTATTAAGCTCATTCAGGCTTCTGCCGTTTTGGATTTA 296 Query 2066 ACTGAGGACGATTTCGAATTCTTAACTCGTGACCGTGTATGGATTGCAACTGACCGCTCC 2125 || || || |||||||| || | || || || || |||||||| ||||||||||| Sbjct 297 ACCGAAGATGATTTCGATTTTCTGACGAGTAACAAAGTTTGGATTGCTACTGACCGCTCT 356 Query 2126 CGTGCTCGCCGCGCTATTGAGGCTTGCGTTTATGGAACTCTGGACTTTGTGGGATACCCT 2185 |||||||| ||| ||||||||||||||||||| || ||||||||||| ||||||||| Sbjct 357 CGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATGGTACGCTGGACTTTGTAGGATACCCT 416 Query 2186 CGCTTTCCTGCTCCTATTGAGTTTATTGCTGCCGTCATTGCTTATTATGTTCATCCCGTT 2245 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 417 CGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTCATTGCTTATTATGTTCATCCCGTC 476 Query 2246 AACATTCAAACGGCATGTCTTATTATGG 2273 |||||||||||||| ||||| || |||| Sbjct 477 AACATTCAAACGGCCTGTCTCATCATGG 504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 17440951407990