Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_001741.1 Length=4877 Score E Sequences producing significant alignments: (Bits) Value seq2790 86.0 2e-13 >seq2790 Length=1429 Score = 86.0 bits (94), Expect = 2e-13 Identities = 248/380 (65%), Gaps = 25/380 (7%) Strand=Plus/Plus Query 867 TTTACGAAGTCTTTTGTTGAGCATGGTTTTGTTATAGGTCTT-CTTTCAGCTACAGCGGA 925 ||||| |||| ||| ||| ||||| | |||| |||||| | || | || || Sbjct 51 TTTACTCAGTCATTTACTGAACATGGCATGATTATTGGTCTTGCGAACAT-TCGTGCCGA 109 Query 926 TTTAACTTATCAGCAAGGTTTAGAGCGTCAGTGGTCAAGATTTAGTCGTTATGATTATTA 985 | | ||||||||||||||||| || |||||| | | || ||||||||||| ||| Sbjct 110 TCTGACTTATCAGCAAGGTTTGTCTCGCATGTGGTCGCGTTCTACTCGTTATGATTTTTA 169 Query 986 TTGGCCTACTTTTGCTCATTTGGGAGAGCAGCCTGTTTATAATAAAGAGATTTATTGCCA 1045 || ||| |||||||| | || || || |||| |||||||||||||||| Sbjct 170 TTTCCCTGCTTTTGCTATGCTTGGTGAACAAGCTGTACTTAATAAAGAGATTTAT----- 224 Query 1046 ATCAGATACTGTTA-TGGATCCTAGTGGTTCTGCGGTTAATGATGTGCCTTTTGGTTATC 1104 | ||||| | || || || || |||| ||| ||||||| Sbjct 225 ----GTTACTGGCACTGCTGCCCAGGACAACT-CGGT------------TTTCGGTTATC 267 Query 1105 AAGAGCGTTATGCTGAGTATCGTTATAAGCCTTCGAAGGTTACTGGATTATTTAGATCTA 1164 ||||||| | || || ||||||||||| || || | | |||| || ||| | Sbjct 268 AAGAGCGGTGGGCCGAATATCGTTATAAACCGTCAATGATTACATCCAAGTTCAGAAGCA 327 Query 1165 ACGCTACAGGTACTCTAGATTCTTGGCATTTGTCTCAGAATTTTGCGAATTTACCTACTT 1224 ||| | || ||| | || ||||||||||| | || |||| | ||| ||||||| Sbjct 328 CAGCTTCTGGAACTTTGGACGCTTGGCATTTGGCCCAACGTTTTACATCTTTGCCTACTT 387 Query 1225 TGAATGAGACTTTTATTCAG 1244 |||| ||||||||| || Sbjct 388 TGAACTCCACTTTTATTGAG 407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15493698902610