Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_001998.1 Length=4529 Score E Sequences producing significant alignments: (Bits) Value seq2790 104 7e-19 seq2517 95.1 3e-16 >seq2790 Length=1429 Score = 104 bits (114), Expect = 7e-19 Identities = 339/523 (65%), Gaps = 44/523 (8%) Strand=Plus/Plus Query 1309 AGTCTTTCACAGAGCATGGTGTAATTCTTGGATTAGCCTCTGTACGTGCCGATCTCAACT 1368 |||| || || || ||||| | ||| |||| | || | ||||||||||| | | Sbjct 58 AGTCATTTACTGAACATGGCATGATTATTGGTCTTGCGAACATTCGTGCCGATCTGACTT 117 Query 1369 ATCAGCAAGGTTTGGATAGGATGTGGTCACGAAGAACGCGCTGGGACTTTTATTGGCCTG 1428 |||||||||||||| | | |||||||| || || || | || ||||||| |||| Sbjct 118 ATCAGCAAGGTTTGTCTCGCATGTGGTCGCGTTCTACTCGTTATGATTTTTATTTCCCTG 177 Query 1429 CTCTTAGCCAT-TTAGGTGAGCAAGCTGTGCTCAATAAAGAGATTTATTGCCAAGGTCCT 1487 || || || || | ||||| |||||||| || ||||||||||||||| Sbjct 178 CT-TTTGCTATGCTTGGTGAACAAGCTGTACTTAATAAAGAGATTTAT------------ 224 Query 1488 GCAGTTAAGGATGCTCAGAATGGTAATGTTGTTGTGGATGAGCAAGTCTTTGGATATCAG 1547 ||| | ||| | || || ||| | || || || ||||| Sbjct 225 ---GTT------------ACTGGCACTGCTGCCCAGGACAACTCGGTTTTCGGTTATCAA 269 Query 1548 GAGAGATTTGCGGAGTATCGCTATAAGACTTCGAAAATTACTGGGAAGTTCCGATCAAAT 1607 ||| | | || || ||||| ||||| | || | ||||| |||||| || | Sbjct 270 GAGCGGTGGGCCGAATATCGTTATAAACCGTCAATGATTACATCCAAGTTCAGAAGCACA 329 Query 1608 GCTACAGGTTCTTTAGATGCATGGCATTTAGCTCAGCAGTTTGAGAATCTTCCAACACTT 1667 ||| | || |||| || || |||||||| || || | |||| | ||||| |||| Sbjct 330 GCTTCTGGAACTTTGGACGCTTGGCATTTGGCCCAAC-GTTTTA-CATCTTTGCCTACTT 387 Query 1668 T---CTCCAGAGTTTATCGAAGAAAATCCTCCTATGGATCGTGTTGTTGCTGTAGATACT 1724 | ||||| ||||| || || | |||||| | | ||| |||||||||| | |||| Sbjct 388 TGAACTCCA-CTTTTATTGAGGATACTCCTCCAGTTGCTCGGGTTGTTGCTGCTGGTACT 446 Query 1725 GAGCCAGATTTTC------TCTTAGATGGTTGG--TTTTCATTGCGTT-GTGCAAGACCA 1775 | | || || | ||| || || | |||| |||| ||| ||| | ||| Sbjct 447 CAAGCTAATGGTCAACAGTTTTTATTTGATTCGTTTTTTAATTGTGTTACTGCTCGCCCA 506 Query 1776 ATGCCTGTCTATTCTGTTCCAGGCCTCATTGATCATTTCTAAT 1818 |||||| | |||||||| || || | |||||||||||||||| Sbjct 507 ATGCCTTTGTATTCTGTCCCCGGTTTAATTGATCATTTCTAAT 549 >seq2517 Length=1311 Score = 95.1 bits (104), Expect = 3e-16 Identities = 338/522 (65%), Gaps = 46/522 (9%) Strand=Plus/Minus Query 1311 TCTTTCACAGAGCATGGTGTAATTCTTGGATTAGCCTCTGTACGTGCCGATCTCAACTAT 1370 || || || || ||||| | ||| | || || || | ||||||||||| | | |||| Sbjct 870 TCATTTACTGAACATGGAATGATTATCGGTTTGGCTAATATACGTGCCGATTTGACCTAT 811 Query 1371 CAGCAAGGTTTGGATAGGATGTGGTCACGAAGAACGCGCTGGGACTTTTATTGGCCTGCT 1430 || |||||| | ||| | |||||||| || || |||| || ||||||| ||||| Sbjct 810 CAACAAGGTCTTGATCGTATGTGGTCGCGGTCTACTCGCTACGATTTTTATTTTCCTGC- 752 Query 1431 CTTAGCCAT-TTAGGTGAGCAAGCTGTGCTCAATAAAGAGATTTAT-TGCCAAGGTCCTG 1488 || || || | ||||| |||||||| | || || || |||||| || | ||| ||| Sbjct 751 GTTTGCGATGCTTGGTGAACAAGCTGTTTTGAACAAGGAAATTTATGTGAC-TGGTACTG 693 Query 1489 CAGTTAAGGATGCTCAGAATGGTAATGTTGTTGTGGATGAGCAAGTCTTTGGATATCAGG 1548 | ||| ||| | || | |||| ||||| || |||| Sbjct 692 C---------TGCCCAG---GACAACGCTGTT---------------TTTGGCTACCAGG 660 Query 1549 AGAGATTTGCGGAGTATCGCTATAAGACTTCGAAAATTACTGGGAAGTTCCGATCAAATG 1608 | ||| || || ||||||||||| |||| | ||||| |||||||| | || Sbjct 659 AACGATGGGCCGAATATCGCTATAAACCTTCTATGATTACATCCAAGTTCCGCAGCACTG 600 Query 1609 CTACAGGTTCTTTAGATGCATGGCATTTAGCTCAGCAGTTTGAGAATCTTCCAACACTTT 1668 || | || |||| || || ||||| || || |||| ||| |||||| || | Sbjct 599 CTTCGGGAACTTTGGACGCCTGGCACTTGGCGCAGCGTTTTACTGCTCTTCCTACTTTGA 540 Query 1669 CTCCAGAGTTT-ATCGAAGAAAATCCTCCTATGGATCGTGT---------TGTTGCTGTA 1718 | | || ||| |||||||| | ||||||| || ||||| || ||||| Sbjct 539 ATAC-GACTTTCATCGAAGATACTCCTCCTGTGTCGCGTGTCGTCGCTGCTGGTGCTGCT 481 Query 1719 GATACTGAGCCAGATTTTCTCTTAGA-TGGTTGGTTTTCATTGCGTT-GTGCAAGACCAA 1776 | || | | | | ||| | || || | ||| |||| |||| ||| || |||| | Sbjct 480 GCTAACGGTCAACAATTTTTGTTTGACTCGTT--TTTTAATTGTGTTACGGCTCGACCTA 423 Query 1777 TGCCTGTCTATTCTGTTCCAGGCCTCATTGATCATTTCTAAT 1818 |||| | ||||||||||| || | ||||| || ||||||| Sbjct 422 TGCCGTTGTATTCTGTTCCCGGTTTGATTGACCACTTCTAAT 381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14380149291270