Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_002180.1 Length=4532 Score E Sequences producing significant alignments: (Bits) Value seq2790 95.1 3e-16 seq3324 78.8 3e-11 >seq2790 Length=1429 Score = 95.1 bits (104), Expect = 3e-16 Identities = 337/523 (64%), Gaps = 44/523 (8%) Strand=Plus/Plus Query 1308 AGTCTTTCACAGAACATGGTGTAATTCTTGGATTAGCCTCTGTACGCGCCGATCTCAACT 1367 |||| || || |||||||| | ||| |||| | || | || |||||||| | | Sbjct 58 AGTCATTTACTGAACATGGCATGATTATTGGTCTTGCGAACATTCGTGCCGATCTGACTT 117 Query 1368 ATCAGCAAGGTTTGGATAGGATGTGGTCACGAAGAACGCGCTGGGACTTTTACTGGCCTG 1427 |||||||||||||| | | |||||||| || || || | || ||||| | |||| Sbjct 118 ATCAGCAAGGTTTGTCTCGCATGTGGTCGCGTTCTACTCGTTATGATTTTTATTTCCCTG 177 Query 1428 CTCTTAGCCAT-TTAGGTGAGCAAGCTGTGCTCAATAAAGAGATCTATTGCCAAGGTCCT 1486 || || || || | ||||| |||||||| || ||||||||||| ||| Sbjct 178 CT-TTTGCTATGCTTGGTGAACAAGCTGTACTTAATAAAGAGATTTAT------------ 224 Query 1487 GCAGTTAAGGATGCTCAGAATGGTAATGTTGTTGTGGATGAGCAAGTCTTTGGATATCAG 1546 ||| | ||| | || || ||| | || || || ||||| Sbjct 225 ---GTT------------ACTGGCACTGCTGCCCAGGACAACTCGGTTTTCGGTTATCAA 269 Query 1547 GAGAGATTTGCGGAGTATCGCTATAAGACTTCGAAAATCACTGGGAAGTTCCGATCAAAT 1606 ||| | | || || ||||| ||||| | || | || || |||||| || | Sbjct 270 GAGCGGTGGGCCGAATATCGTTATAAACCGTCAATGATTACATCCAAGTTCAGAAGCACA 329 Query 1607 GCTACAGGTTCTTTAGATGCATGGCATTTAGCTCAGCAGTTTGAGAATCTTCCAACACTT 1666 ||| | || |||| || || |||||||| || || | |||| | ||||| |||| Sbjct 330 GCTTCTGGAACTTTGGACGCTTGGCATTTGGCCCAAC-GTTTTA-CATCTTTGCCTACTT 387 Query 1667 T---CTCCAGAGTTTATCGAAGAAAATCCTCCTATGGATCGTGTTGTTGCTGTAGATACT 1723 | ||||| ||||| || || | |||||| | | ||| |||||||||| | |||| Sbjct 388 TGAACTCCA-CTTTTATTGAGGATACTCCTCCAGTTGCTCGGGTTGTTGCTGCTGGTACT 446 Query 1724 GAGCCAGATTTTC------TCTTAGATGGTTGG--TTTTCATTGCGTT-GTGCAAGACCA 1774 | | || || | ||| || || | |||| |||| ||| ||| | ||| Sbjct 447 CAAGCTAATGGTCAACAGTTTTTATTTGATTCGTTTTTTAATTGTGTTACTGCTCGCCCA 506 Query 1775 ATGCCTGTCTATTCTGTTCCAGGTCTTATTGATCATTTCTAAT 1817 |||||| | |||||||| || ||| | |||||||||||||||| Sbjct 507 ATGCCTTTGTATTCTGTCCCCGGTTTAATTGATCATTTCTAAT 549 >seq3324 Length=1042 Score = 78.8 bits (86), Expect = 3e-11 Identities = 154/226 (68%), Gaps = 4/226 (2%) Strand=Plus/Plus Query 257 AAGACTACATTCGACGCCGGTTACCTAATCCCTATCTTTTGCGATGAAGTTCTCCCTGGA 316 || ||||| || ||||| ||||| | || ||| | | | ||| |||||||| || || Sbjct 635 AAAACTACTTTTGACGCTGGTTATTTGATTCCTGTTTATGTCGACGAAGTTCTTCCCGGT 694 Query 317 GATACTTTC--TCCTTGAAAGAGGCGTTTTTAGCACGTATGGCTACGCCTATCTTTCCTC 374 ||||| ||| || | | | || |||| || ||| ||||||||||||| |||||| Sbjct 695 GATACGTTCAATCTTCGTATGACTGCTTTT--GCTCGTTTGGCTACGCCTATTTTTCCTA 752 Query 375 TTATGGATAATTTGCGTTTAGATACGCAGTATTTCTTTGTTCCTCTTCGACTTATATGGT 434 ||||||||| ||| ||| || || | || ||||| || ||| | | ||| Sbjct 753 CAATGGATAATATGCATTTGGACACTTTTTTCTTTTTTGTCCCAAATCGTTTGGTCTGGA 812 Query 435 CGAATTTCCAAAAGTTCTGTGGAGAACAAGATAATCCTGGAGATTC 480 | |||| ||||| || ||||| ||||||||| ||||| Sbjct 813 CAAATTGGGTTAAGTTTATGGGTGAACAGGATAATCCTTCTGATTC 858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14389748856885