Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_002194.1 Length=4563 Score E Sequences producing significant alignments: (Bits) Value seq2790 82.4 2e-12 >seq2790 Length=1429 Score = 82.4 bits (90), Expect = 2e-12 Identities = 338/527 (64%), Gaps = 42/527 (8%) Strand=Plus/Plus Query 1188 TTTCACAAAGTCTTTCACAGAACATGGTGTAATCCTTGGATTAGCCTCTGTACGCGCCGA 1247 ||| || |||| || || |||||||| | || |||| | || | || ||||| Sbjct 50 TTTTACTCAGTCATTTACTGAACATGGCATGATTATTGGTCTTGCGAACATTCGTGCCGA 109 Query 1248 TCTCAACTATCAGCAAGGTTTGGATAGGATGTGGTCACGAAGAACACGCTGGGACTTTTA 1307 ||| | ||||||||||||||| | | |||||||| || || || | || ||||| Sbjct 110 TCTGACTTATCAGCAAGGTTTGTCTCGCATGTGGTCGCGTTCTACTCGTTATGATTTTTA 169 Query 1308 CTGGCCTGCTCTTAGCCAT-TTAGGTGAGCAAGCTGTGCTCAATAAAGAGATCTATTGTC 1366 | |||||| || || || | ||||| |||||||| || ||||||||||| || ||| Sbjct 170 TTTCCCTGCT-TTTGCTATGCTTGGTGAACAAGCTGTACTTAATAAAGAGATTTA-TGTT 227 Query 1367 AAGGTCCTTCAGTTAAAAATTCTG--GAGGAGAGATTGTGGATGACCAAGTCTTTGGATA 1424 | | | | | ||| |||| | || || || || || Sbjct 228 ACTGGC-----------ACTGCTGCCCAGGACA-----------ACTCGGTTTTCGGTTA 265 Query 1425 TCAGGAGAGATTTGCGGAGTATCGCTATAAGACTTCGAAAATTACCGGCAAGTTCCGATC 1484 ||| ||| | | || || ||||| ||||| | || | ||||| ||||||| || Sbjct 266 TCAAGAGCGGTGGGCCGAATATCGTTATAAACCGTCAATGATTACATCCAAGTTCAGAAG 325 Query 1485 AAATGCTACAAGTTCTTTAGATTCATGGCATTTAGCTCAGGAATTTGAGAATCTTCCAAC 1544 | ||| | | |||| || | |||||||| || || | || ||||| Sbjct 326 CACAGCTTCTGGAACTTTGGACGCTTGGCATTTGGCCCA--ACGTTTTACATCTTTGCCT 383 Query 1545 ACTTT---CTCCGGAGTTTATCGAAGAAAATCCTCCTATGGATCGTGTTCTTGCTGTAAG 1601 ||||| |||| ||||| || || | |||||| | | ||| ||| |||||| | Sbjct 384 ACTTTGAACTCC-ACTTTTATTGAGGATACTCCTCCAGTTGCTCGGGTTGTTGCTGCTGG 442 Query 1602 TACTGAGCCAGATTTTC------TTTTAGATGGTTGG--TTTTCATTGCGTTGC-GCAAG 1652 |||| | | || || ||||| || || | |||| |||| ||| | || | Sbjct 443 TACTCAAGCTAATGGTCAACAGTTTTTATTTGATTCGTTTTTTAATTGTGTTACTGCTCG 502 Query 1653 ACCAATGCCTGTTTACTCTGTCCCAGGCTTCATTGATCATTTCTAAT 1699 ||||||||| | || |||||||| || || |||||||||||||||| Sbjct 503 CCCAATGCCTTTGTATTCTGTCCCCGGTTTAATTGATCATTTCTAAT 549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14488944368240