Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_007461.1 Length=4530 Score E Sequences producing significant alignments: (Bits) Value seq2790 80.6 8e-12 >seq2790 Length=1429 Score = 80.6 bits (88), Expect = 8e-12 Identities = 120/168 (71%), Gaps = 2/168 (1%) Strand=Plus/Plus Query 1157 AGTCCTTCACAGAACATGGTGTAATCCTTGGATTAGCCTCTGTACGCGCCGATCTCAACT 1216 |||| || || |||||||| | || |||| | || | || |||||||| | | Sbjct 58 AGTCATTTACTGAACATGGCATGATTATTGGTCTTGCGAACATTCGTGCCGATCTGACTT 117 Query 1217 ATCAGCAAGGTTTGGATAGGATGTGGTCACGAAGAACGCGCTGGGACTTTTACTGGCCTG 1276 |||||||||||||| | | |||||||| || || || | || ||||| | |||| Sbjct 118 ATCAGCAAGGTTTGTCTCGCATGTGGTCGCGTTCTACTCGTTATGATTTTTATTTCCCTG 177 Query 1277 CTCTTAGCCAT-TTAGGTGAGCAAGCTGTGCTCAATAAAGAGATCTAT 1323 || || || || | ||||| |||||||| || ||||||||||| ||| Sbjct 178 CT-TTTGCTATGCTTGGTGAACAAGCTGTACTTAATAAAGAGATTTAT 224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14383349146475