Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_027633.1 Length=4609 Score E Sequences producing significant alignments: (Bits) Value seq2517 273 6e-70 seq3324 131 5e-27 seq2790 120 9e-24 seq4055 86.0 2e-13 seq659 86.0 2e-13 seq1831 80.6 8e-12 >seq2517 Length=1311 Score = 273 bits (302), Expect = 6e-70 Identities = 408/575 (71%), Gaps = 18/575 (3%) Strand=Plus/Minus Query 979 TATGCTGATTTATCTTTGGCTACTGCTGCGACTATTAATTCGCTTCGTCAAGCTTTTCAG 1038 |||||||| | || |||||| ||||||||||||| ||| || ||| |||||||| Sbjct 1179 TATGCTGACCTTTCGGCCGCTACTTCTGCGACTATTAACCAGCTGCGCCAATCTTTTCAG 1120 Query 1039 ATTCAGAAATTGTATGAGCGTGATGCTCGTGGAGGTACGCGTTATACTGAGGTACTTCGT 1098 || || ||||| |||||| ||||||||||| ||||| |||||||||||| | | ||| Sbjct 1119 ATCCAAAAATTACTTGAGCGAGATGCTCGTGGCGGTACTCGTTATACTGAGATTGTGCGT 1060 Query 1099 GCTCATTTTGGTGTAGTTTCTCCTGATGCTCGTTTGCAGCGTCCTGAGTATTTAGGAGGT 1158 ||||||||||||| |||||||||||||| || | || || ||||| ||||| || ||| Sbjct 1059 TCTCATTTTGGTGTGGTTTCTCCTGATGCCCGACTTCAACGCCCTGAATATTTGGGCGGT 1000 Query 1159 GGTTCTGTTCGTGTTATAATTAATCCTGTTGCTCAGACTTCTGCTACTAATGAAATTGGA 1218 || ||| || | |||| ||||| ||||| ||||||||||||| ||| || | ||| Sbjct 999 GGCTCTTCTCCTATTATCATTAACCCTGTCGCTCAGACTTCTGGCACTGGTGTTACTGGT 940 Query 1219 GGTGTTACTCCTCAAGGTAATCTTGCTGCTTATGGTATAG--TTAG-TTCTCATGGTCAT 1275 ||| ||||||| | |||| | || ||| ||| | | |||| ||||| | ||| Sbjct 939 GGTTCTACTCCTTTGGCTAATTTGGCCGCTATTGGCACTGGTTTAGCTTCTC---GCCAT 883 Query 1276 GGTTTTATTAGGTCTTTTGTTGAGCATTCGATTATTATTGGTCTTGTTAGTGTTCGTGCT 1335 ||||||| | || ||| ||| ||| || ||||| ||| | | || | | ||||| Sbjct 882 GGTTTTACTCAATCATTTACTGAACATGGAATGATTATCGGTTTGGCTAATATACGTGCC 823 Query 1336 GATTTGTCTTATCAGCAAAATATAAATAGGATGTGGTCTCGTCAGACTCGGTTTGATTTT 1395 |||||| | ||||| ||| | | || | |||||||| || ||||| | |||||| Sbjct 822 GATTTGACCTATCAACAAGGTCTTGATCGTATGTGGTCGCGGTCTACTCGCTACGATTTT 763 Query 1396 TATTGGCCTGTTTTGTCGCATTTAGGTGAGGATGCTGTTTTAAATAAAGAGATTTATTTT 1455 |||| |||| || || | ||||| | |||||||| || || || |||||| | Sbjct 762 TATTTTCCTGCGTTTGCGATGCTTGGTGAACAAGCTGTTTTGAACAAGGAAATTTATGT- 704 Query 1456 GATACTACTGCTAATGTTGCTACTTGGAATAATGAAGAAGCTTTTGGTTATCAAGAGCGT 1515 |||| || || ||| | || | | | | |||||| || || || || Sbjct 703 -----GACTGGTACTGCTGC--CCAGG----ACAACGCTGTTTTTGGCTACCAGGAACGA 655 Query 1516 TGGGCTGATTATCGTTATTATCCTTCTCAGATTAC 1550 ||||| || ||||| ||| | |||||| |||||| Sbjct 654 TGGGCCGAATATCGCTATAAACCTTCTATGATTAC 620 >seq3324 Length=1042 Score = 131 bits (144), Expect = 5e-27 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 83 ATAAGACTACGTTTAGAGCTGGTTATTTGATTCCATTTTATGTTGATGAGGTTTTACCTG 142 |||| ||||| ||| ||||||||||||||||| ||||||| || || ||| | || | Sbjct 633 ATAAAACTACTTTTGACGCTGGTTATTTGATTCCTGTTTATGTCGACGAAGTTCTTCCCG 692 Query 143 GAGATACTTTTAATTTGAAAGTTAGTACTTTTGCTAGGTTGTTAACTCCTATTGTTCCTA 202 | ||||| || ||| | | | | |||||||| | ||| || |||||| |||||| Sbjct 693 GTGATACGTTCAATCTTCGTATGACTGCTTTTGCTCGTTTGGCTACGCCTATTTTTCCTA 752 Query 203 TAATGGATAATATGTTTATGGATATTCAtttttttGTTGTTCCTAATCGTTTGGTTTGGA 262 ||||||||||||| | |||| | | ||| ||| |||| || ||||||||||| |||| Sbjct 753 CAATGGATAATATGCATTTGGACACTTTTTTCTTTTTTGTCCCAAATCGTTTGGTCTGGA 812 Query 263 ACAATTGGGAGAAATTT 279 ||||||| || ||| Sbjct 813 CAAATTGGGTTAAGTTT 829 >seq2790 Length=1429 Score = 120 bits (132), Expect = 9e-24 Identities = 195/280 (70%), Gaps = 12/280 (4%) Strand=Plus/Plus Query 1271 GTCATGGTTTTATTAGGTCTTTTGTTGAGCATTCGATTATTATTGGTCTTGTTAGTGTTC 1330 |||||||||||| | ||| ||| ||| ||| || ||||||||||||| | ||| Sbjct 43 GTCATGGTTTTACTCAGTCATTTACTGAACATGGCATGATTATTGGTCTTGCGAACATTC 102 Query 1331 GTGCTGATTTGTCTTATCAGCAAAATATAAATAGGATGTGGTCTCGTCAGACTCGGTTTG 1390 |||| ||| || ||||||||||| | | | | |||||||| ||| ||||| | || Sbjct 103 GTGCCGATCTGACTTATCAGCAAGGTTTGTCTCGCATGTGGTCGCGTTCTACTCGTTATG 162 Query 1391 ATTTTTATTGGCCTGTTTTGTCGCATTTAGGTGAGGATGCTGTTTTAAATAAAGAGATTT 1450 ||||||||| |||| ||| | | ||||| | ||||| | ||||||||||||| Sbjct 163 ATTTTTATTTCCCTGCTTTTGCTATGCTTGGTGAACAAGCTGTACTTAATAAAGAGATTT 222 Query 1451 ATTTTGATACTACTGCTAATGTTGCTACTTGGAATAATGAAGAAGCTTTTGGTTATCAAG 1510 || | ||||| | || ||| | ||| | | | ||| |||||||||| Sbjct 223 ATGT------TACTGGCACTGCTGC--CCAGGACAACT----CGGTTTTCGGTTATCAAG 270 Query 1511 AGCGTTGGGCTGATTATCGTTATTATCCTTCTCAGATTAC 1550 |||| ||||| || ||||||||| | || || |||||| Sbjct 271 AGCGGTGGGCCGAATATCGTTATAAACCGTCAATGATTAC 310 >seq4055 Length=2357 Score = 86.0 bits (94), Expect = 2e-13 Identities = 125/177 (71%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 982 GCTGATTTATCTTTGGCTACTGCTGCGACTATTAATTCGCTTCGTCAAGCTTTTCAGATT 1041 || || |||||| || |||||||| || ||||| | | |||||||| | Sbjct 1615 GCAGACTTATCTAAAGCCACTGCTGCTACAGTTAATGATTTAAGGTTTGCTTTTCAATTA 1556 Query 1042 CAGAAATTGTATGAGCGTGATGCTCGTGGAGGTACGCGTTATACTGAGGTACTTCGTGCT 1101 || ||| ||||||| | ||||| || || ||||| ||||||||||| || | | | | Sbjct 1555 CAAAAAATGTATGAAAGAGATGCACGCGGTGGTACTCGTTATACTGAATTATTACATTCA 1496 Query 1102 CATTTTGGTGTAGTTTCTCCTGATGCTCGTTTGCAGCGTCCTGAGTATTTAGGAGGT 1158 ||||||||||| ||||| || ||| | | |||| | || || |||||||| ||| Sbjct 1495 CATTTTGGTGTTGTTTCACCAGATAGTAGAATGCAAAGACCCGAATATTTAGGTGGT 1439 >seq659 Length=566 Score = 86.0 bits (94), Expect = 2e-13 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 979 TATGCTGATTTATCTTTGGCTACTGCTGCGACTATTAATTCGCTTCGTCAAGCTTTTCAG 1038 ||||||||| | || || ||| |||||||||||||| | | |||||| |||||||| Sbjct 102 TATGCTGATCTTTCGGCTGCCACTTCTGCGACTATTAATCAGTTGCGTCAATCTTTTCAG 43 Query 1039 ATTCAGAAATTGTATGAGCGTGATGCTCGTGGAGGTACGCGT 1080 || || || ||| ||| |||||||| ||||| ||||| ||| Sbjct 42 ATCCAAAAGTTGCTTGAACGTGATGCCCGTGGCGGTACTCGT 1 >seq1831 Length=490 Score = 80.6 bits (88), Expect = 8e-12 Identities = 91/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 3285 TTCTTGAAGAGTTATGGCCTTATGGTTTTTGTGTTATAGGTAATGTGACTTTTGAGAGTG 3344 |||||||| | ||||| |||||||| | | ||| || ||||||||||||||| || Sbjct 65 TTCTTGAATCCATTTGGCCCTATGGTTTATCTTCTATTGGAAATGTGACTTTTGAGTCTG 124 Query 3345 CTGCTTATGTTGCTCGTTATATTATGAAGAAGCAGACTGGTAAGGATGCTAAGGAACATT 3404 |||||||| ||||||||||| | | ||| |||||| | | ||||||| |||| Sbjct 125 CTGCTTATATTGCTCGTTATTGTGTTTCTAAGGTAACTGGTGACGCTGCTAAGTCTCATT 184 Query 3405 AT 3406 || Sbjct 185 AT 186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14636137707670