Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_027636.1 Length=4501 Score E Sequences producing significant alignments: (Bits) Value seq2517 307 3e-80 seq3324 237 4e-59 seq2790 206 8e-50 seq359 84.2 6e-13 seq86 82.4 2e-12 >seq2517 Length=1311 Score = 307 bits (340), Expect = 3e-80 Identities = 555/807 (69%), Gaps = 19/807 (2%) Strand=Plus/Minus Query 839 TATGCTGATCTTTCCCAGGCTACCGCTGCAACAATTAATCAGCTCCGGCAGTCGTTTCAG 898 |||||||| ||||| ||||| |||| || ||||| ||||| || || || |||||| Sbjct 1179 TATGCTGACCTTTCGGCCGCTACTTCTGCGACTATTAACCAGCTGCGCCAATCTTTTCAG 1120 Query 899 ATACAGAAGCTTTTAGAAAGGGATGCTCGTGGTGGAACACGATATACAGAGATTGTGCGA 958 || || || | | || | ||||||||||| || || || ||||| ||||||||||| Sbjct 1119 ATCCAAAAATTACTTGAGCGAGATGCTCGTGGCGGTACTCGTTATACTGAGATTGTGCGT 1060 Query 959 TCTCACTTCGGCGTTATCAGCCCGGATGCTCGCTTGCAACGACCCGAGTACCTTGGCGGC 1018 ||||| || || || | || ||||| || | ||||| || || || | ||||| Sbjct 1059 TCTCATTTTGGTGTGGTTTCTCCTGATGCCCGACTTCAACGCCCTGAATATTTGGGCGGT 1000 Query 1019 GCGAGTACGCCTATCGCAGTCAATCCAATTGCTCAGACGTCAGGCACTTCAGCAAGCGGT 1078 | | | ||||| | || || | |||||||| || |||||| | | ||| Sbjct 999 GGCTCTTCTCCTATTATCATTAACCCTGTCGCTCAGACTTCTGGCACTGGTGTTACTGGT 940 Query 1079 ACGACCACGCCGCTGGGAACCTTGTCTGCGATGGGAACAGCTTT-GCATCAGGGCAGCGG 1137 | || || ||| | ||| | || || || || | ||| || || | || || Sbjct 939 GGTTCTACTCCTTTGGCTAATTTGGCCGCTATTGGCACTGGTTTAGCTTCTCGCCAT-GG 881 Query 1138 TTTTACTCAGTCCTTCACAGAACACGGGTACGTTATTGGGCTCGTTGCTGTCCGGGCGGA 1197 ||||||||| || || || ||||| || |||| || | | | | | || || || Sbjct 880 TTTTACTCAATCATTTACTGAACATGGAATGATTATCGGTTTGGCTAATATACGTGCCGA 821 Query 1198 TTTGACCTATCAGCAGGGTCTT---CGGAAGCTTTGGTCTCGTTCTACCCGTTATGATTA 1254 |||||||||||| || |||||| || | | ||||| || ||||| || || |||| Sbjct 820 TTTGACCTATCAACAAGGTCTTGATCGTATG---TGGTCGCGGTCTACTCGCTACGATTT 764 Query 1255 CTATTTTCCTGCGTTCGCGATGCTCGGTGAGCAAGCTGTTTTGAACAAGGAGATTTATTG 1314 |||||||||||||| |||||||| ||||| |||||||||||||||||||| ||||| || Sbjct 763 TTATTTTCCTGCGTTTGCGATGCTTGGTGAACAAGCTGTTTTGAACAAGGAAATTTA-TG 705 Query 1315 TGATGGGT----CTGCCAATGACCCTCTTGTTTTTGGGTATCAGGAGCGTTGGGCTGAGT 1370 ||| ||| ||||| | ||| ||||||||| || ||||| || ||||| || | Sbjct 704 TGACTGGTACTGCTGCCCAGGACAACGCTGTTTTTGGCTACCAGGAACGATGGGCCGAAT 645 Query 1371 ATCGTTATTTTCCGGCGATGATTACTTCGCTTTTTAAGTCCACGTCTGCGGGGACGATTG 1430 |||| ||| || | |||||||| || || ||| || |||| || | | Sbjct 644 ATCGCTATAAACCTTCTATGATTACATCCAAGTTCCGCAGCACTGCTTCGGGAACTTTGG 585 Query 1431 ATGGCTGGCATGCTGCTCAGAAGTTTACTTCGTTGCCTACTCTTAATAGCACTTTTATAT 1490 | | |||||| || ||| |||||| | | |||||| | |||| ||||| || Sbjct 584 ACGCCTGGCACTTGGCGCAGCGTTTTACTGCTCTTCCTACTTTGAATACGACTTTCATCG 525 Query 1491 CTGATACTCCGCCTATTTCGCGTATTGTTGCTGTNNNNNNNNGTGCGAATGGTCAGCAGT 1550 |||||||| ||| | |||||| | || |||| ||| || ||||| || | Sbjct 524 AAGATACTCCTCCTGTGTCGCGTGTCGTCGCTGCTGGTGCTGCTGCTAACGGTCAACAAT 465 Query 1551 TTTTGTTTGATTCTTTTTTCCGCATCCGTG---CGGCTAGGCCCATGCCGTTGTACTCGG 1607 |||||||||| || ||||| | ||| ||||| | || ||||||||||| || | Sbjct 464 TTTTGTTTGACTCGTTTTT---TAATTGTGTTACGGCTCGACCTATGCCGTTGTATTCTG 408 Query 1608 TGCCTGGTTTGATTGACCATTTCTAAT 1634 | || |||||||||||||| ||||||| Sbjct 407 TTCCCGGTTTGATTGACCACTTCTAAT 381 >seq3324 Length=1042 Score = 237 bits (262), Expect = 4e-59 Identities = 246/321 (77%), Gaps = 1/321 (0%) Strand=Plus/Plus Query 7 CGTAACAGGTCTGTTGATGTTCATCGTTTTGCGATGGTTCCCAAAGCGGATATTCCGCGT 66 ||||| | || || ||| |||||||||||||||| |||| ||||||||||| ||| Sbjct 548 CGTAATCGTTCGGTCGATCCTCATCGTTTTGCGATGATTCCTCGCGCGGATATTCCCCGT 607 Query 67 TCGTCGTTTGATAATTCAGACTACTCACAAGACTACGTTTGACGCCGGTTATTTGATTCC 126 | || ||| || | || |||||| || ||||| |||||||| |||||||||||||| Sbjct 608 GCTTCTTTTAATCGT-CAATTTACTCATAAAACTACTTTTGACGCTGGTTATTTGATTCC 666 Query 127 TATTTATGTTGATGAGATTCTTCCCGGCGATACTTTTAATTTGCAGATGACTGCGTTTGC 186 | ||||||| || || |||||||||| ||||| || ||| | | |||||||| ||||| Sbjct 667 TGTTTATGTCGACGAAGTTCTTCCCGGTGATACGTTCAATCTTCGTATGACTGCTTTTGC 726 Query 187 GCGTATGGCGACTCCGTTGTTTCCGTTGATGGATAATTTGTACATGGATTCGtttttttt 246 ||| |||| || || | ||||| ||||||||| || | |||| | ||||| || Sbjct 727 TCGTTTGGCTACGCCTATTTTTCCTACAATGGATAATATGCATTTGGACACTTTTTTCTT 786 Query 247 CTTTGTTCCGAATCGTTTGGTTTGGATTCATTGGAAGCAGTTCATGGGTGAGCAGGATAA 306 ||||| || ||||||||||| |||| ||||| |||| |||||||| |||||||| Sbjct 787 TTTTGTCCCAAATCGTTTGGTCTGGACAAATTGGGTTAAGTTTATGGGTGAACAGGATAA 846 Query 307 TCCTGGTGATTCGATTTCTTA 327 |||| |||||| |||||||| Sbjct 847 TCCTTCTGATTCAATTTCTTA 867 >seq2790 Length=1429 Score = 206 bits (228), Expect = 8e-50 Identities = 353/509 (69%), Gaps = 17/509 (3%) Strand=Plus/Plus Query 1136 GGTTTTACTCAGTCCTTCACAGAACACGGGTACGTTATTGGGCTCGTTGCTGTCCGGGCG 1195 |||||||||||||| || || ||||| || ||||||| || | | || || Sbjct 48 GGTTTTACTCAGTCATTTACTGAACATGGCATGATTATTGGTCTTGCGAACATTCGTGCC 107 Query 1196 GATTTGACCTATCAGCAGGGTCT---TCGGAAGCTTTGGTCTCGTTCTACCCGTTATGAT 1252 ||| |||| |||||||| ||| | ||| | | ||||| |||||||| ||||||||| Sbjct 108 GATCTGACTTATCAGCAAGGTTTGTCTCGCA---TGTGGTCGCGTTCTACTCGTTATGAT 164 Query 1253 TACTATTTTCCTGCGTTCGCGATGCTCGGTGAGCAAGCTGTTTTGAACAAGGAGATTTAT 1312 | ||||| ||||| || || ||||| ||||| |||||||| | || || ||||||||| Sbjct 165 TTTTATTTCCCTGCTTTTGCTATGCTTGGTGAACAAGCTGTACTTAATAAAGAGATTTAT 224 Query 1313 TGTGATGG---GTCTGCCAATGAC-CCTCTTGTTTTTGGGTATCAGGAGCGTTGGGCTGA 1368 | ||| ||||| | ||| ||| ||||| || ||||| ||||| ||||| || Sbjct 225 GTTACTGGCACTGCTGCCCAGGACAACTC-GGTTTTCGGTTATCAAGAGCGGTGGGCCGA 283 Query 1369 GTATCGTTATTTTCCGGCGATGATTACTTCGCTTTTTAAGTCCACGTCTGCGGGGACGAT 1428 ||||||||| ||| | |||||||| || || | ||| || | || || | Sbjct 284 ATATCGTTATAAACCGTCAATGATTACATCCAAGTTCAGAAGCACAGCTTCTGGAACTTT 343 Query 1429 TGATGGCTGGCATGCTGCTCAGAAGTTTACTTCGTTGCCTACTCTTAATAGCACTTTTAT 1488 || | |||||| || || ||||| || ||||||||| | || ||||||||| Sbjct 344 GGACGCTTGGCATTTGGCCCAACGTTTTACATCTTTGCCTACTTTGAACTCCACTTTTAT 403 Query 1489 ATCTGATACTCCGCCTATTTCGCGTATTGTTGCTGTNNNNNNNNGTGCGAATGGTCAGCA 1548 |||||||| || || | || ||||||||| || |||||||| || Sbjct 404 TGAGGATACTCCTCCAGTTGCTCGGGTTGTTGCTGCTGGTACTCAAGCTAATGGTCAACA 463 Query 1549 GTTTTTGTTTGATTCTTTTTTCCGCATCCGTG---CGGCTAGGCCCATGCCGTTGTACTC 1605 |||||| |||||||| ||||| | ||| | ||| | || ||||| ||||| || Sbjct 464 GTTTTTATTTGATTCGTTTTT---TAATTGTGTTACTGCTCGCCCAATGCCTTTGTATTC 520 Query 1606 GGTGCCTGGTTTGATTGACCATTTCTAAT 1634 || || ||||| ||||| |||||||||| Sbjct 521 TGTCCCCGGTTTAATTGATCATTTCTAAT 549 >seq359 Length=2522 Score = 84.2 bits (92), Expect = 6e-13 Identities = 127/179 (71%), Gaps = 4/179 (2%) Strand=Plus/Plus Query 841 TGCTGATCTTTCCCAGGCTACCGCTGCAACAATTAATCAGCTCCGGCAGTCGTTTCAGAT 900 ||| ||||| || | || || ||||| || || || |||||| ||| |||| || | Sbjct 1201 TGCAGATCTGTCGAATGCGACGGCTGCCACCATCAACTCGCTCCGTCAGGCGTTCCAACT 1260 Query 901 ACAGAAGCTTTTAGAAAGGGATGCTCGTGGTGGAACACGATATACAGAGATTGTGCGATC 960 ||||||| | || ||| | ||||| || || || || ||||| | ||| || | | | Sbjct 1261 ACAGAAGATGTTCGAACGCGATGCACGCGGGGGTACCCGATACATCGAGCTTATCAAAGC 1320 Query 961 TCACTTCGGCGTTA--TCAGCCCGGATGCTCGCTTGCAACGACCCGAGTACCTTGGCGG 1017 ||||||||||| | ||| ||||| || || ||||| || |||||||| ||||| Sbjct 1321 CCACTTCGGCGTCACTTCA--CCGGACGCGCGTTTGCAGCGCGTGGAGTACCTCGGCGG 1377 >seq86 Length=1311 Score = 82.4 bits (90), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 3/231 (1%) Strand=Plus/Plus Query 42 GGTTCCCAAAGCGGATATTCCGCGTTCGTCGTTTGATAATTCAG-ACTACTCACAAGACT 100 |||||| |||||||| ||||||||||| ||| || ||| | ||| || || Sbjct 480 GGTTCCTAAAGCGGAAATTCCGCGTTCACAGTTCGACCG--CAGCAGCGGTCATAAAACA 537 Query 101 ACGTTTGACGCCGGTTATTTGATTCCTATTTATGTTGATGAGATTCTTCCCGGCGATACT 160 || ||||||||||| || || || | | ||| |||||| | ||||| || ||||| Sbjct 538 ACCTTTGACGCCGGAATCTTAATCCCGTTCTTTGTCGATGAGGTCCTTCCAGGTGATACG 597 Query 161 TTTAATTTGCAGATGACTGCGTTTGCGCGTATGGCGACTCCGTTGTTTCCGTTGATGGAT 220 || || | | | || || ||||| ||||||| ||| | || |||||||| Sbjct 598 TTCAACCTTCGTACAACGATCTTCGCGCGCTTGGCGACGCCGATTAAACCCGTGATGGAT 657 Query 221 AATTTGTACATGGATTCGttttttttCTTTGTTCCGAATCGTTTGGTTTGG 271 ||| ||||| ||| | || |||||||| ||||||||| | || ||| Sbjct 658 AATATGTACGCGGACACTCAATTCTTCTTTGTGCCGAATCGTCTTGTCTGG 708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14290553345530