Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_027637.1 Length=4656 Score E Sequences producing significant alignments: (Bits) Value seq3324 116 1e-22 seq2790 102 2e-18 seq2517 102 2e-18 seq659 96.9 1e-16 >seq3324 Length=1042 Score = 116 bits (128), Expect = 1e-22 Identities = 184/262 (70%), Gaps = 4/262 (2%) Strand=Plus/Plus Query 61 CCCCGTGCTATTTTTAATCGTACTTTTACTCATAAGACTACTTGTAACGCCGGTATGTTG 120 ||||||||| |||||||||| ||||||||||| ||||||| | |||| ||| ||| Sbjct 602 CCCCGTGCTTCTTTTAATCGTCAATTTACTCATAAAACTACTTTTGACGCTGGTTATTTG 661 Query 121 ATTCCGTTTCTTATTGATGAGATTTATCCTGGCGATACTTTTAAGCTTCGTTCTACTTTT 180 ||||| || | | || || || ||| || ||||| || || |||||| ||| | Sbjct 662 ATTCCTGTTTATGTCGACGAAGTTCTTCCCGGTGATACGTTCAATCTTCGTATGACTGCT 721 Query 181 CTTGCTCGTATGTCTACTCCCATTTATCCGGTTATGGACAATTT--ATTCATCGATACCC 238 |||||||| || |||| || |||| ||| ||||| ||| | ||| | || || Sbjct 722 TTTGCTCGTTTGGCTACGCCTATTTTTCCTACAATGGATAATATGCATT--TGGACACTT 779 Query 239 AATTTTTCTTTATACCCAATCGTTTACTTTGGACCCACTGGGAGCAGTTTATGGGTTACC 298 || || ||| | || |||||||| | ||||| | |||| ||||||||||| | | Sbjct 780 TTTTCTTTTTTGTCCCAAATCGTTTGGTCTGGACAAATTGGGTTAAGTTTATGGGTGAAC 839 Query 299 AAGAAAACCCTGGCGATTCTAT 320 | || || ||| ||||| || Sbjct 840 AGGATAATCCTTCTGATTCAAT 861 >seq2790 Length=1429 Score = 102 bits (112), Expect = 2e-18 Identities = 262/396 (66%), Gaps = 5/396 (1%) Strand=Plus/Plus Query 1101 TCATGGTTTTACTAAGAGTTTCCCTGAACATGGTTTTATCCTTGGTCTTATGTCTATTCG 1160 ||||||||||||| || || |||||||||| | || |||||||| | ||||| Sbjct 44 TCATGGTTTTACTCAGTCATTTACTGAACATGGCATGATTATTGGTCTTGCGAACATTCG 103 Query 1161 TGCTGATTATACATATCAGCAGGGTGCTGAAAGATTCTGGTTCCGCAAAGCTCGTTTCGA 1220 ||| ||| || |||||||| ||| | | |||| || |||||| || Sbjct 104 TGCCGATCTGACTTATCAGCAAGGTTTGTCTCGCATGTGGTCGCGTTCTACTCGTTATGA 163 Query 1221 TCTTTATACTCCTGAGTTTGCTAATCTTGGCGAACAAGCCGTTTTAAACCAAGAGATTTA 1280 | ||||| |||| ||||||| ||||| |||||||| || | || |||||||||| Sbjct 164 TTTTTATTTCCCTGCTTTTGCTATGCTTGGTGAACAAGCTGTACTTAATAAAGAGATTTA 223 Query 1281 TGCTCAAGGAACTTCTGC---TGATCAAGAGCCTTTTGGTTACCAAGAAGCATGGGCTGA 1337 || | || ||| |||| || | | ||| ||||| ||||| ||||| || Sbjct 224 TGTTACTGGCACTGCTGCCCAGGACAACTCGGTTTTCGGTTATCAAGAGCGGTGGGCCGA 283 Query 1338 ATTGCGTTATAAGCCTTCTCGTATTTCTGGTTATTTTCGAAGTAATGCCACTGGTACTTT 1397 || |||||||| || || ||| | | || |||| | || |||| ||||| Sbjct 284 ATATCGTTATAAACCGTCAATGATTACATCCAAGTTCAGAAGCACAGCTTCTGGAACTTT 343 Query 1398 AGATGCTTGGCATTTATCCCAGGAATTTACATCCCCTCCAACTCTTTCAC-CTGCTTTTA 1456 || ||||||||||| |||| |||||||| || ||| || || | |||||| Sbjct 344 GGACGCTTGGCATTTGGCCCAACGTTTTACATCTTTGCCTACT-TTGAACTCCACTTTTA 402 Query 1457 TTATTGAAAATCCACCTATGGCTCGTGTTGAGGCTG 1492 || || | ||| || | ||||| |||| |||| Sbjct 403 TTGAGGATACTCCTCCAGTTGCTCGGGTTGTTGCTG 438 >seq2517 Length=1311 Score = 102 bits (112), Expect = 2e-18 Identities = 411/645 (64%), Gaps = 12/645 (2%) Strand=Plus/Minus Query 799 TATGCTGATCTCTCTTCTGCTACTAGTGCTACTATTAATGATTTGCGTCTTTCCATTGCC 858 |||||||| || || | |||||| ||| |||||||| | |||| | || || Sbjct 1179 TATGCTGACCTTTCGGCCGCTACTTCTGCGACTATTAACCAGCTGCGCCAATCTTTTCAG 1120 Query 859 ACCCAACAATATCTTGAACGTGATATGCGTAGTGGCACACGTTACACTGAAGTGTTGCTT 918 | |||| ||| ||||| || ||| ||| | || || ||||| ||||| | ||| | Sbjct 1119 ATCCAAAAATTACTTGAGCGAGATGCTCGTGGCGGTACTCGTTATACTGAGATTGTGCGT 1060 Query 919 GGACATTGGGGAATTGCTGCCCAGGACGCCCGTTTGCAACGTAGCGAATATCTTGGTGGC 978 |||| || | | | | | || ||||| | ||||| |||||| | || || Sbjct 1059 TCTCATTTTGGTGTGGTTTCTCCTGATGCCCGACTTCAACGCCCTGAATATTTGGGCGGT 1000 Query 979 GGTTCAACACAGATTAATTTCCATCCTGTCGCTCAGACTGCACCTTCTGATGCATCTGGT 1038 || || | | |||| | | ||||||||||||||| |||| ||| ||||| Sbjct 999 GGCTCTTCTCCTATTATCATTAACCCTGTCGCTCAGACT------TCTG--GCA-CTGGT 949 Query 1039 TCTGGTGAGGAATCCTCGCCTCAAGGTACTCTTTCTGCCTTTGCTACAGCTGTTGGTTAT 1098 | || | || | ||| | || | | | || ||| || | | | | || | Sbjct 948 GTTACTGGTGGTTCTACTCCTTTGGCTAATTTGGCCGCTATTGGCACTGGTTTAGCTTCT 889 Query 1099 GATCATGGTTTTACTAAGAGTTTCCCTGAACATGGTTTTATCCTTGGTCTTATGTCTATT 1158 |||||||||||| | || |||||||||| | || | ||| | ||| Sbjct 888 CGCCATGGTTTTACTCAATCATTTACTGAACATGGAATGATTATCGGTTTGGCTAATATA 829 Query 1159 CGTGCTGATTATACATATCAGCAGGGTGCTGAAAGATTCTGGTTCCGCAAAGCTCGTTTC 1218 ||||| |||| || ||||| || ||| ||| | | |||| || |||| | | Sbjct 828 CGTGCCGATTTGACCTATCAACAAGGTCTTGATCGTATGTGGTCGCGGTCTACTCGCTAC 769 Query 1219 GATCTTTATACTCCTGAGTTTGCTAATCTTGGCGAACAAGCCGTTTTAAACCAAGAGATT 1278 ||| ||||| ||||| |||||| | ||||| |||||||| ||||| ||| | || ||| Sbjct 768 GATTTTTATTTTCCTGCGTTTGCGATGCTTGGTGAACAAGCTGTTTTGAACAAGGAAATT 709 Query 1279 TATGCTCAAGGAACTTCTGC---TGATCAAGAGCCTTTTGGTTACCAAGAAGCATGGGCT 1335 |||| || ||| |||| || | | |||||| ||||| ||| |||||| Sbjct 708 TATGTGACTGGTACTGCTGCCCAGGACAACGCTGTTTTTGGCTACCAGGAACGATGGGCC 649 Query 1336 GAATTGCGTTATAAGCCTTCTCGTATTTCTGGTTATTTTCGAAGTAATGCCACTGGTACT 1395 |||| || ||||| |||||| ||| | | || || || | ||| | || ||| Sbjct 648 GAATATCGCTATAAACCTTCTATGATTACATCCAAGTTCCGCAGCACTGCTTCGGGAACT 589 Query 1396 TTAGATGCTTGGCATTTATCCCAGGAATTTACATCCCCTCCAACT 1440 || || || ||||| || | ||| ||||| | | ||| ||| Sbjct 588 TTGGACGCCTGGCACTTGGCGCAGCGTTTTACTGCTCTTCCTACT 544 >seq659 Length=566 Score = 96.9 bits (106), Expect = 1e-16 Identities = 153/217 (71%), Gaps = 13/217 (6%) Strand=Plus/Minus Query 439 CGTGCTTACAACAAGGTTTATAATGATTGGTATCGCGATCAGAATTTACAAGATTCTGTT 498 |||||||| || ||||| |||| |||| ||| ||| | ||||| ||| || ||| Sbjct 486 CGTGCTTATAATTTAATTTATGATGAATGGTTTCGTGATGAAAATTTGCAAAATGCTGCC 427 Query 499 GTTTTGCCTAATGGTGATGGTCCTGAT------GCTCCTACTGATTATGT--TTTGTTGC 550 || || ||| ||||||||||||||| || ||||| ||||| | || || || Sbjct 426 ATTGTGGATAAGGGTGATGGTCCTGATTCCTCCCCTGCTACTAATTATTTTCTTCGTCGC 367 Query 551 CTCGTGGTAAACGCCACGATTATTTTACCTCTGCACTTCCTACACCTCAGAAGGGTGCTG 610 |||||||| || || ||||||||||| |||||| | ||| || || ||||| | | Sbjct 366 --CGTGGTAAGCGACATGATTATTTTACTTCTGCATTGCCTTGGCCCCAAAAGGGAGGTA 309 Query 611 CT---GTTCAGCTTCCACTTGGTACTACCGCACCTAT 644 || ||| ||||| | || ||| | |||||||| Sbjct 308 CTAGCGTTACCCTTCCTTTGGGCACTTCTGCACCTAT 272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14786530902305