Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_027642.1 Length=4624 Score E Sequences producing significant alignments: (Bits) Value seq2517 206 8e-50 seq359 120 9e-24 seq3324 118 3e-23 seq659 113 1e-21 >seq2517 Length=1311 Score = 206 bits (228), Expect = 8e-50 Identities = 517/784 (66%), Gaps = 20/784 (3%) Strand=Plus/Minus Query 814 GCTACTGCGGCTACTATTAACCAGCTTCGTCAGGCTTTTCAGATACAGAAGATTTATGAG 873 |||||| | || |||||||||||||| || || |||||||||| || || | |||| Sbjct 1161 GCTACTTCTGCGACTATTAACCAGCTGCGCCAATCTTTTCAGATCCAAAAATTACTTGAG 1102 Query 874 AGGGATGCCCGTGGAGGTACGCGTTATACGGAGCTTATTCAGGCTCACTTTGGCGTCACT 933 | ||||| ||||| ||||| |||||||| ||| || | | |||| ||||| || | Sbjct 1101 CGAGATGCTCGTGGCGGTACTCGTTATACTGAGATTGTGCGTTCTCATTTTGGTGTGGTT 1042 Query 934 TCTCCTGACGCTCGTTTGCAGCGTGCTGAGTATCTCGGTGGTGGTTCTACTCCCATTAAT 993 |||||||| || || | || || |||| ||| | || ||||| ||| |||| |||| Sbjct 1041 TCTCCTGATGCCCGACTTCAACGCCCTGAATATTTGGGCGGTGGCTCTTCTCCTATTATC 982 Query 994 GTTAATCCTATTGCGCAGACGCAAGGTACTGGGGCGTCTGGCACGACTACACCGCAGGGT 1053 |||| ||| | || ||||| || ||||| | |||| |||| || || | Sbjct 981 ATTAACCCTGTCGCTCAGACTTCTGGCACTGGTGTTACTGGTGGTTCTACTCCTTTGGCT 922 Query 1054 AATCTGGCCGCTATTGGTACTATGTCACATAGAGGCGTCGGTTTTACTAAGTCGTTTACC 1113 ||| ||||||||||||| ||| | | | || ||||||||| | || ||||| Sbjct 921 AATTTGGCCGCTATTGGCACTGGTTTAGCTTCTCGCCATGGTTTTACTCAATCATTTACT 862 Query 1114 GAGCATTGTCTGCTAATTGGTTTGTTGGAGGTTACTGCTGATTTGTCTTATCAGCAGGGT 1173 || ||| | || | || |||||| | | ||| |||||| | ||||| || ||| Sbjct 861 GAACATGGAATGATTATCGGTTTGGCTAATATACGTGCCGATTTGACCTATCAACAAGGT 802 Query 1174 CTTGAACGTATGTGGTCTCGTCAAACGCGGTTTGATTTTTTCTGGCCCGCGTTGGCGCAG 1233 ||||| ||||||||||| || || || | ||||||| | || ||||| ||| | Sbjct 801 CTTGATCGTATGTGGTCGCGGTCTACTCGCTACGATTTTTATTTTCCTGCGTTTGCGATG 742 Query 1234 ATTGGTGAGCAGGCGGTGCTCAATCAAGAGATTTGTATGGTTGGCGGTGCTAC---GGAT 1290 ||||||| || || || | || | || |||| | || ||| |||| | ||| Sbjct 741 CTTGGTGAACAAGCTGTTTTGAACAAGGAAATTTATGTGACTGGTACTGCTGCCCAGGAC 682 Query 1291 ACCCAGATTTGGGGGTATCAGGAGCGTTATGCTGAGTATCGGTATAAGCCGTCTCGTATT 1350 | | ||| || || ||||| || | || || ||||| ||||| || ||| ||| Sbjct 681 AACGCTGTTTTTGGCTACCAGGAACGATGGGCCGAATATCGCTATAAACCTTCTATGATT 622 Query 1351 TGCGGTCAGTTTCGGAGTTCGTATACGGCGCCGTTGGATAGTTGGCATTTGTCGCAATAC 1410 |||| || || | | ||| | ||||| ||||| ||| |||| Sbjct 621 ACATCCAAGTTCCGCAGCACTGCTTCGGGAACTTTGGACGCCTGGCACTTGGCGCAGCGT 562 Query 1411 TTTACGACTCTTCCGGCGCTTAATTCGACTTTTATTCAGGATGCTCCGCCTATTTCGCGG 1470 ||||| ||||||| | | ||| ||||||| || | ||| |||| ||| | ||||| Sbjct 561 TTTACTGCTCTTCCTACTTTGAATACGACTTTCATCGAAGATACTCCTCCTGTGTCGCGT 502 Query 1471 ATTGTTGC----GGTGCCTTCGCAACCG-----CAGTTTTTGTTGGATTGTTATTTCAAT 1521 | || || ||||| || | || || |||||||| || | | ||| ||| Sbjct 501 GTCGTCGCTGCTGGTGCTGCTGCTAACGGTCAACAATTTTTGTTTGACTCGTTTTTTAAT 442 Query 1522 TTGAAGTGCT----CTCGGCCCATGCCGGTGTATGGTGTGCCTGGTAACATTGATCGTTT 1577 | ||| | |||| || |||||| ||||| ||| || ||| ||||| | || Sbjct 441 T----GTGTTACGGCTCGACCTATGCCGTTGTATTCTGTTCCCGGTTTGATTGACCACTT 386 Query 1578 CTAA 1581 |||| Sbjct 385 CTAA 382 >seq359 Length=2522 Score = 120 bits (132), Expect = 9e-24 Identities = 137/184 (74%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 803 ATTTGGCGACTGCTACTGCGGCTACTATTAACCAGCTTCGTCAGGCTTTTCAGATACAGA 862 || || ||| ||| || || || || || ||| ||| |||||||| || || |||||| Sbjct 1206 ATCTGTCGAATGCGACGGCTGCCACCATCAACTCGCTCCGTCAGGCGTTCCAACTACAGA 1265 Query 863 AGATTTATGAGAGGGATGCCCGTGGAGGTACGCGTTATACGGAGCTTATTCAGGCTCACT 922 |||| | || | ||||| || || ||||| || || | |||||||| | || |||| Sbjct 1266 AGATGTTCGAACGCGATGCACGCGGGGGTACCCGATACATCGAGCTTATCAAAGCCCACT 1325 Query 923 TTGGCGTCACTTCTCCTGACGCTCGTTTGCAGCGTGCTGAGTATCTCGGTGGTGGTTCTA 982 | ||||||||||| || ||||| ||||||||||| | ||||| ||||| || || || | Sbjct 1326 TCGGCGTCACTTCACCGGACGCGCGTTTGCAGCGCGTGGAGTACCTCGGCGGAGGCTCCA 1385 Query 983 CTCC 986 | || Sbjct 1386 CCCC 1389 >seq3324 Length=1042 Score = 118 bits (130), Expect = 3e-23 Identities = 103/128 (80%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 77 CTACTTTCGATAGTGGTTATTTGATTCCTATTTATGTCGATGAGGCTTTGCCGGGTGATA 136 ||||||| || |||||||||||||||| |||||||||| || | | | || ||||||| Sbjct 639 CTACTTTTGACGCTGGTTATTTGATTCCTGTTTATGTCGACGAAGTTCTTCCCGGTGATA 698 Query 137 CGTTCAATCTGAGTTTAACTACGTTTGCTCGTTTGTCTACGCCGTTGCATCCTGTAATGG 196 |||||||||| || | ||| | |||||||||||| ||||||| | |||| ||||| Sbjct 699 CGTTCAATCTTCGTATGACTGCTTTTGCTCGTTTGGCTACGCCTATTTTTCCTACAATGG 758 Query 197 ATAATATG 204 |||||||| Sbjct 759 ATAATATG 766 >seq659 Length=566 Score = 113 bits (124), Expect = 1e-21 Identities = 132/179 (74%), Gaps = 6/179 (3%) Strand=Plus/Minus Query 415 TTTCCTCGGGCGTATAATTTGATTTGGAATCAGTGGTTTCGTGATCAGAATTTGCAGAAT 474 ||| |||| || |||||||| |||| || | |||||||||||| | |||||||| ||| Sbjct 492 TTTACTCGTGCTTATAATTTAATTTATGATGAATGGTTTCGTGATGAAAATTTGCAAAAT 433 Query 475 TCTGTTGTTGTCGATATGGGTGACGGTCCTGAT------AATCCGGCTAATTATGTTTTG 528 ||| |||| |||| |||||| ||||||||| | | |||||||| || | Sbjct 432 GCTGCCATTGTGGATAAGGGTGATGGTCCTGATTCCTCCCCTGCTACTAATTATTTTCTT 373 Query 529 TTGAGGCGCGGTAAGCGCCATGATTATTTTACGGCGTCGTTGCCTTGGCCTCAGAAGGG 587 | || |||||||| |||||||||||||| | | ||||||||||| || ||||| Sbjct 372 CGTCGCCGTGGTAAGCGACATGATTATTTTACTTCTGCATTGCCTTGGCCCCAAAAGGG 314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14684135535745