Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_027645.1 Length=4631 Score E Sequences producing significant alignments: (Bits) Value seq2517 324 4e-85 seq3324 161 3e-36 seq2790 132 1e-27 seq3440 111 5e-21 seq659 100 8e-18 seq359 91.5 4e-15 >seq2517 Length=1311 Score = 324 bits (358), Expect = 4e-85 Identities = 567/815 (70%), Gaps = 19/815 (2%) Strand=Plus/Minus Query 849 CCTTTATGCGGACCTTTCTACTGCGACGGCTGCGACTATTAACCAGCTGCGGCAGAGCTT 908 ||||||||| |||||||| | || || |||||||||||||||||||||| || || Sbjct 1183 CCTTTATGCTGACCTTTCGGCCGCTACTTCTGCGACTATTAACCAGCTGCGCCAATCTTT 1124 Query 909 TCAGATCCAGAAGTTGCTTGAGCGCGATGCGCGTGGCGGCACCCGCTATACCGAGATTGT 968 ||||||||| || || |||||||| ||||| |||||||| || || ||||| |||||||| Sbjct 1123 TCAGATCCAAAAATTACTTGAGCGAGATGCTCGTGGCGGTACTCGTTATACTGAGATTGT 1064 Query 969 TCGTTCACACTTCGGTGTTATTTCGCCGGATGCTAGGCTGCAGCGTCCGGAGTACCTTGG 1028 ||||| || || ||||| |||| || ||||| | || || || || || || | || Sbjct 1063 GCGTTCTCATTTTGGTGTGGTTTCTCCTGATGCCCGACTTCAACGCCCTGAATATTTGGG 1004 Query 1029 TGGTGGTCATTCGATGATTTCGATGAATCCTATTGCTCAGACGCAAGGCACGGGTGCGAG 1088 ||||| ||| ||| || || ||| | |||||||| ||||| |||| | Sbjct 1003 CGGTGGCTCTTCTCCTATTATCATTAACCCTGTCGCTCAGACTTCTGGCACTGGTGTTAC 944 Query 1089 TGGTACCTCCACGCCGCAGGGTAACTTGGCTGCTTTCGG----GCATTACCTT-GCGCCG 1143 |||| || || || || ||| ||||| ||| | || | ||| ||| ||| Sbjct 943 TGGTGGTTCTACTCCTTTGGCTAATTTGGCCGCTATTGGCACTGGTTTAGCTTCTCGC-- 886 Query 1144 AATCATGGTTTTACGCAGAGCTTTACCGAGCATGGTCACATCATCGGTTTGGTGGCGGTT 1203 ||||||||||| || ||||| || ||||| || |||||||||| | Sbjct 885 ---CATGGTTTTACTCAATCATTTACTGAACATGGAATGATTATCGGTTTGGCTAATATA 829 Query 1204 CGTGCGGATCTGACGTATCAGC-AGGGCATGCGCAAGATGTGGTCTCGGTTGACTAGGTA 1262 ||||| ||| |||| ||||| | ||| | || | |||||||| |||| ||| | || Sbjct 828 CGTGCCGATTTGACCTATCAACAAGGTCTTGATC-GTATGTGGTCGCGGTCTACTCGCTA 770 Query 1263 TGACTTTTATTTCCCGGTTTTTGCGATGCTTGGCGAGCAGGCTGTTTTGAACAAGGAGAT 1322 || |||||||| || | |||||||||||||| || || ||||||||||||||||| || Sbjct 769 CGATTTTTATTTTCCTGCGTTTGCGATGCTTGGTGAACAAGCTGTTTTGAACAAGGAAAT 710 Query 1323 TTATTGCGA-TGG---TTCGGCCAACGATACTGCTGTATTTGGTTATCAGGAAAGGTGGG 1378 ||| || || ||| | | ||| | || | ||||| ||||| || |||||| | |||| Sbjct 709 TTA-TGTGACTGGTACTGCTGCCCAGGACAACGCTGTTTTTGGCTACCAGGAACGATGGG 651 Query 1379 CTGAGTACCGCTACAACCCCTCTCAAATTACCGGCCTTTTCCGCTCTACTTATGCGACGC 1438 | || || ||||| || || ||| ||||| | |||||| ||| | || Sbjct 650 CCGAATATCGCTATAAACCTTCTATGATTACATCCAAGTTCCGCAGCACTGCTTCGGGAA 591 Query 1439 CGCTGGATGCTTGGCATTACGCGCAGAAGTTTACGTCGCTTCCGACACTCGCTTCGACGT 1498 | |||| || ||||| | |||||| ||||| | ||||| || | | |||| | Sbjct 590 CTTTGGACGCCTGGCACTTGGCGCAGCGTTTTACTGCTCTTCCTACTTTGAATACGACTT 531 Query 1499 TTATCCAGGACACTCCCCCTTTGTCCCGCAACCTTGCGGTTGGCGCTGGGGCCAATGGCC 1558 | ||| | || ||||| ||| |||| || | | || | ||| |||| || || || | Sbjct 530 TCATCGAAGATACTCCTCCTGTGTCGCGTGTCGTCGCTGCTGGTGCTGCTGCTAACGGTC 471 Query 1559 AGCAATTGCTCCTGGACGCTTTCTTTAA-CATGCAAGTCGCCCGTCCGCTCCCGATGTAT 1617 | ||||| | | ||| | || ||||| || | || || || | ||| ||||| Sbjct 470 AACAATTTTTGTTTGACTCGTTTTTTAATTGTGTTA-CGGCTCGACCTATGCCGTTGTAT 412 Query 1618 TCGGTCCCCGGTTTGATTGATCATTTCTGATATGC 1652 || || |||||||||||||| || |||| |||||| Sbjct 411 TCTGTTCCCGGTTTGATTGACCACTTCTAATATGC 377 >seq3324 Length=1042 Score = 161 bits (178), Expect = 3e-36 Identities = 336/493 (68%), Gaps = 8/493 (2%) Strand=Plus/Plus Query 16 AATAGGTCGGTCAATGCTCACGATTTTGCGATGGTCCCGCGCGCGGAGATTCCGCGCTCG 75 ||| | |||||| || |||| |||||||||| | || |||||||| ||||| || | Sbjct 551 AATCGTTCGGTCGATCCTCATCGTTTTGCGATGATTCCTCGCGCGGATATTCCCCGTGCT 610 Query 76 TCGTTTGCGATGCAGAAGACTTTGAAGACTACGTTTGATTCGGGTTACTTGGTCCCCATC 135 || ||| || ||| || ||||| ||||| | ||||| ||| | || | Sbjct 611 TCTTTTAATCGTCAATTTACTCATAAAACTACTTTTGACGCTGGTTATTTGATTCCTGTT 670 Query 136 -ATGTGCGAGGAGGTGCTTCCCGGGGATACGTTCAACGTTAAGACCAC-GCTGTTTGGTC 193 |||| ||| || || |||||||| ||||||||||| || | || ||| |||| || Sbjct 671 TATGT-CGACGAAGTTCTTCCCGGTGATACGTTCAATCTTCGTATGACTGCT-TTTGCTC 728 Query 194 GTCTGGCTACGCCGATTTTTCCTGTGATGGACAACCTTCACCTCGAGACGttttttttCT 253 || |||||||||| ||||||||| ||||| || | || | || || ||||| || | Sbjct 729 GTTTGGCTACGCCTATTTTTCCTACAATGGATAATATGCATTTGGACACTTTTTTCTTTT 788 Query 254 TCGTGCCGAATCGTTTGGTTTGGTCTGATTGGCAGCGTTTCATGGGTGAGCAGGCGAACC 313 | || || ||||||||||| ||| | ||||| || |||||||| |||| || | Sbjct 789 TTGTCCCAAATCGTTTGGTCTGGACAAATTGGGTTAAGTTTATGGGTGAACAGGATAATC 848 Query 314 CGGCTGATTCGATTTCTTTTTCTATTCCGCAGGTCGTTAGTCCTGCGAGTGGTTATGTTG 373 | ||||||| ||||||| | || || ||| ||| ||| | ||||||||| | Sbjct 849 CTTCTGATTCAATTTCTTATGTGATACCTCAGCAAGTTTCTCCAGTTGGTGGTTATGCTA 908 Query 374 CGAACTCGCTCTATGACTATTTCGGTTTACCCACGGTCGGGCAGGT--CGCCGGGACGAA 431 |||||| | || || | || | || ||||| || || || | | || | | Sbjct 909 TTGGCTCGCTTCAGGATTACATGGGCCTTCCTACGGTTGGTCAAGTGACTGCTGGTC--A 966 Query 432 CACGGTTTCCCACTCTGCGCTTCCGATGCGCGCCTACAACCTGATTTTCAACCAATGGTT 491 || ||||| |||||||| | | || || || || |||||| || ||||||| Sbjct 967 GACTGTTTCGCACTCTGCTTTGTTTACCCGTGCTTATAATTTGATTTATGACGAATGGTT 1026 Query 492 TCGTGATGAGAAT 504 ||||||||| ||| Sbjct 1027 TCGTGATGAAAAT 1039 >seq2790 Length=1429 Score = 132 bits (146), Expect = 1e-27 Identities = 344/517 (67%), Gaps = 17/517 (3%) Strand=Plus/Plus Query 1146 TCATGGTTTTACGCAGAGCTTTACCGAGCATGGTCACATCATCGGTTTGGTGGCGGTTCG 1205 |||||||||||| ||| ||||| || ||||| || || ||| | | | |||| Sbjct 44 TCATGGTTTTACTCAGTCATTTACTGAACATGGCATGATTATTGGTCTTGCGAACATTCG 103 Query 1206 TGCGGATCTGACGTATCAGCAGGGCATG---CGCAAGATGTGGTCTCGGTTGACTAGGTA 1262 ||| |||||||| |||||||| || || ||| |||||||| || | ||| | || Sbjct 104 TGCCGATCTGACTTATCAGCAAGGTTTGTCTCGC---ATGTGGTCGCGTTCTACTCGTTA 160 Query 1263 TGACTTTTATTTCCCGGTTTTTGCGATGCTTGGCGAGCAGGCTGTTTTGAACAAGGAGAT 1322 ||| ||||||||||| | |||||| |||||||| || || ||||| | || || ||||| Sbjct 161 TGATTTTTATTTCCCTGCTTTTGCTATGCTTGGTGAACAAGCTGTACTTAATAAAGAGAT 220 Query 1323 TTATTGCGATGG---TTCGGCCAACGATACTGCTGTATTTGGTTATCAGGAAAGGTGGGC 1379 |||| ||| | | ||| | || | | || || |||||||| || ||||||| Sbjct 221 TTATGTTACTGGCACTGCTGCCCAGGACAACTCGGTTTTCGGTTATCAAGAGCGGTGGGC 280 Query 1380 TGAGTACCGCTACAACCCCTCTCAAATTACCGGCCTTTTC---CGCTCTACTTATGCGAC 1436 || || || || || || || ||||| | ||| || | ||| || || Sbjct 281 CGAATATCGTTATAAACCGTCAATGATTACATCCAAGTTCAGAAGCACAGCTTCTG-GA- 338 Query 1437 GCCGCTGGATGCTTGGCATTACGCGCAGAAGTTTACGTCGCTTCCGACACTCGCTTCGAC 1496 | |||| |||||||||| || || ||||| || | || || | || || Sbjct 339 -ACTTTGGACGCTTGGCATTTGGCCCAACGTTTTACATCTTTGCCTACTTTGAACTCCAC 397 Query 1497 GTTTATCCAGGACACTCCCCCTTTGTCCCGCAACCTTGCGGTTGGCGCTGGGGCCAATGG 1556 ||||| |||| ||||| || | | || |||| | ||| || || ||||| Sbjct 398 TTTTATTGAGGATACTCCTCCAGTTGCTCGGGTTGTTGCTGCTGGTACTCAAGCTAATGG 457 Query 1557 CCAGCAATTGCTCCTGGACGCTTTCTTTAA-CATGCAAGTCGCCCGTCCGCTCCCGATGT 1615 || || || | | || | || ||||| || | | || || || | || ||| Sbjct 458 TCAACAGTTTTTATTTGATTCGTTTTTTAATTGTGTTACT-GCTCGCCCAATGCCTTTGT 516 Query 1616 ATTCGGTCCCCGGTTTGATTGATCATTTCTGATATGC 1652 |||| ||||||||||| ||||||||||||| |||||| Sbjct 517 ATTCTGTCCCCGGTTTAATTGATCATTTCTAATATGC 553 >seq3440 Length=2028 Score = 111 bits (122), Expect = 5e-21 Identities = 196/282 (70%), Gaps = 8/282 (3%) Strand=Plus/Plus Query 1351 GCTGTATTTGGTTATCAGGAAAGGTGGGCTGAGTACCGCTACAACCCCTCTCAAATTACC 1410 || || || || ||||||||| ||||||| ||||| |||||| || |||||||||||| Sbjct 764 GCGGTCTTCGGCTATCAGGAACGGTGGGCAGAGTATCGCTACCGGCCATCTCAAATTACC 823 Query 1411 GGCCTTTTCCGCTCTACTTATGC-GACGCCGCTGGATGCTTGGCATTACGCGCAGAAGT- 1468 ||||| ||||| ||||| | || | | | | |||| ||||| | |||||| || Sbjct 824 GGCCTGTTCCGTTCTACGTCGGCTGGCAAC-ATCGATGACTGGCACTTGGCGCAGCGGTT 882 Query 1469 --TTACGTCGCTTCCGACACTCGCTTCGACGTTTATCCAGGACACTCCCCCTTTGTCCCG 1526 ||||| || ||||| ||| | | || || || | ||| || ||||| || ||| Sbjct 883 CCTTACGCCG---CCGACGCTCAATGCCACATTCATTCGGGATACACCCCCGATGGACCG 939 Query 1527 CAACCTTGCGGTTGGCGCTGGGGCCAATGGCCAGCAATTGCTCCTGGACGCTTTCTTTAA 1586 | ||| |||| ||| ||| ||| || || |||| | || | || | | ||||| Sbjct 940 CGTCCTGGCGGCTGGGACTGAGGCGAACAACCTGCAAATTCTGTTTGATTCGGTGTTTAA 999 Query 1587 CATGCAAGTCGCCCGTCCGCTCCCGATGTATTCGGTCCCCGG 1628 ||| | || ||||||| |||| | ||| || || ||||| Sbjct 1000 CATCCGAGCGACCCGTCCTATCCCAACGTACTCCGTACCCGG 1041 >seq659 Length=566 Score = 100 bits (110), Expect = 8e-18 Identities = 85/105 (81%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 849 CCTTTATGCGGACCTTTCTACTGCGACGGCTGCGACTATTAACCAGCTGCGGCAGAGCTT 908 ||||||||| || ||||| |||| || ||||||||||||| ||| |||| || || Sbjct 106 CCTTTATGCTGATCTTTCGGCTGCCACTTCTGCGACTATTAATCAGTTGCGTCAATCTTT 47 Query 909 TCAGATCCAGAAGTTGCTTGAGCGCGATGCGCGTGGCGGCACCCG 953 ||||||||| ||||||||||| || ||||| |||||||| || || Sbjct 46 TCAGATCCAAAAGTTGCTTGAACGTGATGCCCGTGGCGGTACTCG 2 >seq359 Length=2522 Score = 91.5 bits (100), Expect = 4e-15 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 100 AAGACTACGTTTGATTCGGGTTACTTGGTCCCCATCATGTGCGAGGAGGTGCTTCCCGGG 159 ||||| ||| |||| || ||| |||| | ||| || ||||||| |||| || ||||| Sbjct 545 AAGACGACGCTTGACTCCGGTCTCTTGATACCCGTCCTGTGCGACGAGGGACTGCCCGGA 604 Query 160 GATACGTTCAACGTTAAGACCACGCTGTTTGGTCGTCTGGCTACGCCGATTTTTCCTGTG 219 ||||| ||||| | | ||||| | || | || ||||| || || ||| | |||||| Sbjct 605 GATACCTTCAAGCTCGACGCCACGTTCTTCGCCCGACTGGCGACTCCCATTGTCCCTGTG 664 Query 220 ATGGACAACCTTCACCTCGA 239 ||||||||| | ||||||| Sbjct 665 ATGGACAACATGTACCTCGA 684 Score = 86.0 bits (94), Expect = 2e-13 Identities = 127/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 855 TGCGGACCTTTCTACTGCGACGGCTGCGACTATTAACCAGCTGCGGCAGAGCTTTCAGAT 914 ||| || || || | |||||||||||| || || ||| ||| || ||| || || | Sbjct 1201 TGCAGATCTGTCGAATGCGACGGCTGCCACCATCAACTCGCTCCGTCAGGCGTTCCAACT 1260 Query 915 CCAGAAGTTGCTTGAGCGCGATGCGCGTGGCGGCACCCGCTATACCGAGATTGTTCGTTC 974 |||||| || | || |||||||| || || || ||||| || | |||| || | | Sbjct 1261 ACAGAAGATGTTCGAACGCGATGCACGCGGGGGTACCCGATACATCGAGCTTATCAAAGC 1320 Query 975 ACACTTCGGTGTTATTTCGCCGGATGCTAGGCTGCAGCGTCCGGAGTACCTTGGTGGTGG 1034 |||||||| || | ||| ||||| || | ||||||| ||||||||| || || || Sbjct 1321 CCACTTCGGCGTCACTTCACCGGACGCGCGTTTGCAGCGCGTGGAGTACCTCGGCGGAGG 1380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14706534522180