Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_027792.1 Length=1895 Score E Sequences producing significant alignments: (Bits) Value seq3686 118 1e-23 >seq3686 Length=1607 Score = 118 bits (130), Expect = 1e-23 Identities = 142/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 1165 TAGTGGCATAGAGGCTCCCTTGATTTCCACGTTGACCGGGTAACGATCGAGCCAGCGGAG 1224 |||||| || || | ||||||| ||||| || ||||| ||||||||| || || Sbjct 194 TAGTGGGATTGATGAACCCTTGACCTCCACTCGAACAGGGTACTTATCGAGCCATCGCAG 135 Query 1225 CAGATGCGCGATGTCGATACCTCCTCGAAATTCATCAATGACAACGTGAAGCTGATCCCG 1284 || || ||||||||||| ||||||||||||||| | |||||| |||| | Sbjct 134 GAGGTGACTGATGTCGATACTTCCTCGAAATTCATCGAGGACAACAGTTCCCTGACCTGA 75 Query 1285 GTAACCGTCCCAAAACTTGGTTCGAGGGTCCTTAGGATAAGCGTCCATACCGGCTTCTGA 1344 || || |||||||| ||||| | || || |||| |||||| || | |||||||||| Sbjct 74 ATACCCATCCCAAAATTTGGTCCTTGGATCTTTAGAATAAGCTTCGAGACCGGCTTCTTC 15 Query 1345 CCAGGCTCGATGA 1357 |||||| |||||| Sbjct 14 CCAGGCACGATGA 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5954938235462