Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_028993.1 Length=4468 Score E Sequences producing significant alignments: (Bits) Value seq2517 520 3e-144 seq3324 396 8e-107 seq2790 381 2e-102 seq1718 304 4e-79 seq1831 221 3e-54 seq1674 208 2e-50 seq659 185 2e-43 seq2459 183 9e-43 seq1725 170 5e-39 seq86 78.8 3e-11 >seq2517 Length=1311 Score = 520 bits (576), Expect = 3e-144 Identities = 610/821 (74%), Gaps = 20/821 (2%) Strand=Plus/Minus Query 838 GCTACTGCTGCAACTATTAATCAGTTGCGTCAGTCATTTCAGATTCAAAAACTTTTAGAG 897 |||||| |||| |||||||| ||| |||| || || |||||||| |||||| | | ||| Sbjct 1161 GCTACTTCTGCGACTATTAACCAGCTGCGCCAATCTTTTCAGATCCAAAAATTACTTGAG 1102 Query 898 CGTGATGCTCGTGGTGGTACACGTTATACGGAGATTATTCGTGCTCATTTCGGTGTTATT 957 || ||||||||||| ||||| |||||||| |||||| | ||| ||||||| ||||| || Sbjct 1101 CGAGATGCTCGTGGCGGTACTCGTTATACTGAGATTGTGCGTTCTCATTTTGGTGTGGTT 1042 Query 958 TCTCCTGACGCTCGTTTACAGCGTCCTGAATATCTTGGTGGCGGCTCTACTCCAGTTATC 1017 |||||||| || || | || || ||||||||| | || || |||||| |||| ||||| Sbjct 1041 TCTCCTGATGCCCGACTTCAACGCCCTGAATATTTGGGCGGTGGCTCTTCTCCTATTATC 982 Query 1018 ATTAATCCTATTGCCCAAACATCGGGTACAGGTGTTACTGGCGGTAGTACTCCTCTCGCT 1077 ||||| ||| | || || || || || || ||||||||||| ||| ||||||| | ||| Sbjct 981 ATTAACCCTGTCGCTCAGACTTCTGGCACTGGTGTTACTGGTGGTTCTACTCCTTTGGCT 922 Query 1078 AATCTTGCTGGTGTTGGTACTGTCCTCGCCTCTGGTCATGGCTTTACTCAGTCGTTCACT 1137 ||| | || | | |||| |||| | || ||| | ||||| |||||||| || || ||| Sbjct 921 AATTTGGCCGCTATTGGCACTGGTTTAGCTTCTCGCCATGGTTTTACTCAATCATTTACT 862 Query 1138 GAACATGGCGTAATTATTGGTTTGGTTAGTATTCGTGCTGATTTGACTTATCAACAGGGT 1197 |||||||| | ||||| ||||||| || ||| ||||| |||||||| |||||||| ||| Sbjct 861 GAACATGGAATGATTATCGGTTTGGCTAATATACGTGCCGATTTGACCTATCAACAAGGT 802 Query 1198 TTGCATCGTATGTGGTCTCGTTCCACACGTTATGATTTTTATTTCCCTGCTTTTGCTATG 1257 | ||||||||||||| || || || || || ||||||||||| ||||| ||||| ||| Sbjct 801 CTTGATCGTATGTGGTCGCGGTCTACTCGCTACGATTTTTATTTTCCTGCGTTTGCGATG 742 Query 1258 TTGGGTGAACAGCCTGTTTATAATCGTGAGTTGTATATTGAC-GGTTCTGCTAACGATGG 1316 | |||||||| |||||| || || | ||| |||| ||| ||||| | | | Sbjct 741 CTTGGTGAACAAGCTGTTTTGAACAAGGAAATTTAT-GTGACTGGTACTGCTGCCCAGGA 683 Query 1317 TAA---TGTTTTTGGTTATCAAGAGCGTTGGGCTGAATATCGTTACAAGCCTTCTCAAAT 1373 || ||||||||| || || || || ||||| |||||||| || || |||||| || Sbjct 682 CAACGCTGTTTTTGGCTACCAGGAACGATGGGCCGAATATCGCTATAAACCTTCTATGAT 623 Query 1374 TTCAAGTTTGTTTAAGTCTACCAGC------GCAGGCACTATTGATGCTTGGCACTTGGC 1427 | || | |||| |||| | || ||| | || || ||||||||||| Sbjct 622 TACA------TCCAAGTTCCGCAGCACTGCTTCGGGAACTTTGGACGCCTGGCACTTGGC 569 Query 1428 TCAGAAGTTTACATCTTTGCCTACTTTGAATAGTACGTTTATTCAGGAAAATCCTCCTGT 1487 ||| ||||| || | ||||||||||||| || || || | || | ||||||||| Sbjct 568 GCAGCGTTTTACTGCTCTTCCTACTTTGAATACGACTTTCATCGAAGATACTCCTCCTGT 509 Query 1488 TTCTCGTGTTGTTGCGGTTGGTGCTGCGGCTAATGGACAGCAGTTTATTTTTGATTCTTT 1547 || ||||| || || | ||||||||| ||||| || || || ||| | ||||| || || Sbjct 508 GTCGCGTGTCGTCGCTGCTGGTGCTGCTGCTAACGGTCAACAATTTTTGTTTGACTCGTT 449 Query 1548 CTTTCATAATGTTGTTGCTCGTCCTATGCCCTTGTATTCTGTTCCTGGCATGATCGATCA 1607 ||| || |||| ||||| |||||||| |||||||||||||| || |||| || || Sbjct 448 TTTTAATTGTGTTACGGCTCGACCTATGCCGTTGTATTCTGTTCCCGGTTTGATTGACCA 389 Query 1608 TTTCTAATATG---GGAGTTCTTTCTGCTATTGGTACTGCT 1645 |||||||||| || | |||| | || ||||| || || Sbjct 388 CTTCTAATATGCTCGGCGAACTTTTTTCTGTTGGTTCTACT 348 >seq3324 Length=1042 Score = 396 bits (438), Expect = 8e-107 Identities = 394/504 (78%), Gaps = 5/504 (1%) Strand=Plus/Plus Query 7 ATGATGCACAAAAATCGTTCGGTGGATCCCCATCGTTTTGCTATGATTCCGCACGCTGAC 66 |||||||| ||||||||||| ||||| ||||||||||| |||||||| | ||| || Sbjct 539 ATGATGCATCGTAATCGTTCGGTCGATCCTCATCGTTTTGCGATGATTCCTCGCGCGGAT 598 Query 67 ATTCCGCGTGCTAAGTTTGATCGTCAGTTTACTCATAAGACGACTTTTGATGCTGGTTAT 126 ||||| |||||| ||| ||||||| ||||||||||| || |||||||| ||||||||| Sbjct 599 ATTCCCCGTGCTTCTTTTAATCGTCAATTTACTCATAAAACTACTTTTGACGCTGGTTAT 658 Query 127 CTTGTTCCTGTTTATGTGGATGAGGTTCTTCCCGGTGATACATTTAATTTGAATATGACT 186 | ||||||||||||| || || ||||||||||||||||| || ||| | ||||||| Sbjct 659 TTGATTCCTGTTTATGTCGACGAAGTTCTTCCCGGTGATACGTTCAATCTTCGTATGACT 718 Query 187 GCTTTTGCTCGTCTGGCTACTCCT-TTTTTCCTGTTATGGATAATATGGTTTTGGATAGT 245 |||||||||||| ||||||| ||| |||||||| |||||||||||| |||||| | | Sbjct 719 GCTTTTGCTCGTTTGGCTACGCCTATTTTTCCTACAATGGATAATATGCATTTGGACACT 778 Query 246 CtttttcttttttGTTCCTAACCGTTTGATTTGGGATAACTGGCAAAAGTTTAT-GGTGA 304 |||||||||||||| || || |||||| | ||| || ||| |||||||| ||||| Sbjct 779 -TTTTTCTTTTTTGTCCCAAATCGTTTGGTCTGGACAAATTGGGTTAAGTTTATGGGTGA 837 Query 305 GCAGCGTAACCCTGGTGATTCGACTTC-TATGTTGTTCCTCAACAAGTTTCTCCCGCAGG 363 ||| ||| ||| |||||| | ||| ||||| | ||||| ||||||||||| | || Sbjct 838 ACAGGATAATCCTTCTGATTCAATTTCTTATGTGATACCTCAGCAAGTTTCTCCAGTTGG 897 Query 364 TGGTTATGCTGTTGGTTCTTTGCAAGACTATATGGGTTTACCAACTGTTGGTCAGGTTGG 423 |||||||||| |||| || | || || || ||||| | || || |||||||| || Sbjct 898 TGGTTATGCTATTGGCTCGCTTCAGGATTACATGGGCCTTCCTACGGTTGGTCAAGTGAC 957 Query 424 TGCTGGCAATACTATTTCCCATTGCGCTTT-TTTACTCGTGCCTATAATCTTATTTGGAA 482 |||||| | ||| |||| || | ||||| ||||| ||||| |||||| | |||| | Sbjct 958 TGCTGGTCAGACTGTTTCGCACTCTGCTTTGTTTACCCGTGCTTATAATTTGATTTATGA 1017 Query 483 TGAATGGTTTAGAGATCAGAATTT 506 ||||||||| | ||| | ||||| Sbjct 1018 CGAATGGTTTCGTGATGAAAATTT 1041 Score = 224 bits (248), Expect = 3e-55 Identities = 390/549 (71%), Gaps = 35/549 (6%) Strand=Plus/Plus Query 3940 GTTATGACTTTTTGGATAAGGTGTATTTTAAGAAGACTTCTTCTGGCGAGAAGATTTATA 3999 |||| || ||| |||||||| |||||| || |||| ||||| || ||| |||| | Sbjct 1 GTTACGATTTTCCCGATAAGGTTTATTTTCGTAAATCTTCATCTGGTGAAAAGCTTTACA 60 Query 4000 CTTCAAAGCTTTTA--GAGTCTTTATGGGCCATATGGCCTTTCTTAGCGTTGGTAATGTT 4057 |||| |||||| || || | ||| || ||||| | |||| |||| ||||| Sbjct 61 CTTCG--GCTTTTCTTGAATCCATTTGGCCC-TATGGTTTATCTTCTA-TTGGAAATGTG 116 Query 4058 TACCTTCGAGTCCGCTGCCTATATTGCTAGGTATTGTGTTCAGAAGGTTACGGGTGATTT 4117 || || ||||| || || |||||||| | ||||||||| ||||| || |||||| Sbjct 117 -ACTTTTGAGTCTGCCGCTTATATTGCCCGTTATTGTGTTTCTAAGGTAACTGGTGAT-- 173 Query 4118 AGCTG--AAG-CACATTAT-CGTGTTATCACT--------GATGATGGTGAAATTATTGA 4165 |||| ||| | |||||| | ||| | | | | |||||||| ||| ||| Sbjct 174 -GCTGCCAAGTCTCATTATGCATGTCCTGAATATGTTGATGCTGATGGTGTTATTTGTGA 232 Query 4166 TCGTGTTC---CTGAATTCAATCATATGTCACTTAAGCCCGGTATTGGTGCTAAGTGGTT 4222 | ||||| |||| || ||||||||||| || || ||||||||||||||| ||| | Sbjct 233 TTCTGTTCAGCCTGAGTTTAATCATATGTCTCTCAAACCCGGTATTGGTGCTGCTTGGCT 292 Query 4223 AGAGAAGTTTCGGACTGATGTTTTTCCTCGTGATTATGTGGTTATTAATGGTGTTAAGAC 4282 || || | || |||||||||||||||||||||||| || || | |||||||||||| Sbjct 293 TGATAAATATCAGACTGATGTTTTTCCTCGTGATTACGTTATTGTCAATGGTGTTAAGGT 352 Query 4283 TAAGCCTCCCAAATATTATGACGTTTTGTTCGAGCGTGAGTATCCTGGTGTATTTTCAGA 4342 ||||||||| || |||||||| ||||| || | || || || || ||| || || Sbjct 353 TAAGCCTCCTAAGTATTATGATTCCTTGTTTGAAAGAGATAATGCTCTTGAATTCTCCGA 412 Query 4343 GATAGTTGCCCAGCGTGAGCTTGATGGCTATACTCTTA-ATTTGAC-TGGTGAGAATTCT 4400 |||||| || | ||||||||| ||||| ||||| | ||| || ||||||| | ||| Sbjct 413 GATAGTCGCTCGGCGTGAGCTGGATGG--TTACTCGGATTTTTTACGTGGTGAGCAATCT 470 Query 4401 ACGTCTCGTCTTTCAGTTCGTGAGCAGGTTCAATCTGCTCG-TCTT-TCAATGTTGAAAA 4458 | ||| | || ||| || || || || | ||||| |||| |||| |||||| Sbjct 471 GTTGCCCGTTTGTCTGTTAAGGAACAAGTCCATTTGGCTCGTTCTTCTCAA--TTGAAA- 527 Query 4459 GAGGTCTTT 4467 |||||||| Sbjct 528 -AGGTCTTT 535 >seq2790 Length=1429 Score = 381 bits (422), Expect = 2e-102 Identities = 430/572 (75%), Gaps = 8/572 (1%) Strand=Plus/Plus Query 1075 GCTAATCTTGCTGGTGTTGGTACTGTCCTCGCCTCTGGTCATGGCTTTACTCAGTCGTTC 1134 || ||| | || | | | ||||||| ||| || ||| ||||||| ||||||||||| || Sbjct 6 GCCAATTTGGCCGCTATAGGTACTGGCCTTGCTTCTCGTCATGGTTTTACTCAGTCATTT 65 Query 1135 ACTGAACATGGCGTAATTATTGGTTTGGTTAGTATTCGTGCTGATTTGACTTATCAACAG 1194 |||||||||||| | ||||||||| | | | |||||||| ||| |||||||||| || Sbjct 66 ACTGAACATGGCATGATTATTGGTCTTGCGAACATTCGTGCCGATCTGACTTATCAGCAA 125 Query 1195 GGTTTGCATCGTATGTGGTCTCGTTCCACACGTTATGATTTTTATTTCCCTGCTTTTGCT 1254 |||||| ||| |||||||| ||||| || |||||||||||||||||||||||||||||| Sbjct 126 GGTTTGTCTCGCATGTGGTCGCGTTCTACTCGTTATGATTTTTATTTCCCTGCTTTTGCT 185 Query 1255 ATGTTGGGTGAACAGCCTGTTTATAATCGTGAGTTGTATATTGACGGTTCTGCTAACGAT 1314 ||| | |||||||| |||| |||| ||| | ||| || || ||||| | | Sbjct 186 ATGCTTGGTGAACAAGCTGTACTTAATAAAGAGATTTATGTTACTGGCACTGCTGCCCAG 245 Query 1315 GGTAA---TGTTTTTGGTTATCAAGAGCGTTGGGCTGAATATCGTTACAAGCCTTCTCAA 1371 | || ||||| |||||||||||||| ||||| ||||||||||| || || || Sbjct 246 GACAACTCGGTTTTCGGTTATCAAGAGCGGTGGGCCGAATATCGTTATAAACCGTCAATG 305 Query 1372 ATTTCAAGTTTGTTTAAGTCTACCAGC-GCAGGCACTATTGATGCTTGGCACTTGGCTCA 1430 ||| || | || || |||| | || ||| | || |||||||| ||||| || Sbjct 306 ATTACATCCAAG-TTCAGAAGCACAGCTTCTGGAACTTTGGACGCTTGGCATTTGGCCCA 364 Query 1431 GAAGTTTACATCTTTGCCTACTTTGAATAGTACGTTTATTCAGGAAAATCCTCCTGTTTC 1490 ||||||||||||||||||||||| || |||||| |||| | |||||| ||| | Sbjct 365 ACGTTTTACATCTTTGCCTACTTTGAACTCCACTTTTATTGAGGATACTCCTCCAGTTGC 424 Query 1491 TCGTGTTGTTGCGGTTGGTGCTGCGGCTAATGGACAGCAGTTTATTTTTGATTCTTTCTT 1550 ||| |||||||| | |||| || |||||||| || |||||| | |||||||| || || Sbjct 425 TCGGGTTGTTGCTGCTGGTACTCAAGCTAATGGTCAACAGTTTTTATTTGATTCGTTTTT 484 Query 1551 TCATAATGTTGTTGCTCGTCCTATGCCCTTGTATTCTGTTCCTGGCATGATCGATCATTT 1610 | || |||| |||||| || ||||| ||||||||||| || || | || |||||||| Sbjct 485 TAATTGTGTTACTGCTCGCCCAATGCCTTTGTATTCTGTCCCCGGTTTAATTGATCATTT 544 Query 1611 CTAATATG---GGAGTTCTTTCTGCTATTGGT 1639 |||||||| || | |||| | || ||||| Sbjct 545 CTAATATGCTTGGCGAACTTTTTTCTGTTGGT 576 Score = 91.5 bits (100), Expect = 4e-15 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 2416 TGCTTTTAATTATGATGCAGATGTTGTTTCTAATGAAACGGCTTTGACTTGTGAGGATGA 2475 || ||| ||| |||| ||| ||||||| |||||| | |||| |||| | ||||| Sbjct 1292 TGGTTTCAATGGTGATAATGATCTTGTTTCACGTGAAACAGGTTTGTATTGTCAAGATGA 1351 Query 2476 TTCTTTGGCTATCCAGTCTGCTGAGGAGGAATCTAATATTAATACTATCGTTAGGCGGTT 2535 ||||||||||| ||||||||| |||| ||| || | || ||||| || ||| | || || Sbjct 1352 GTCTTTGGCTATTCAGTCTGCTAAGGATGAAACTGACATAAATACAATTGTTCGTCGTTT 1411 Query 2536 TGGCCTTACAGGTGAGTT 2553 ||| | || ||||| || Sbjct 1412 TGGTTTGACTGGTGAATT 1429 >seq1718 Length=627 Score = 304 bits (336), Expect = 4e-79 Identities = 459/650 (71%), Gaps = 36/650 (6%) Strand=Plus/Plus Query 3210 CATCCTGACGATTTTGAGCTTTATGAGATCGGTTCTTTTGATGATGCGACAGGTATCATT 3269 |||||| |||||||| ||||||||||| || || ||||||||| |||| || || ||| Sbjct 5 CATCCTTCTGATTTTGATCTTTATGAGATTGGCTCCTTTGATGATTCGACTGGAATTATT 64 Query 3270 CAAGTTATTGAGCCGCGTCTTGTTGCTCGTGCAAAAGACTTGAAGGAT---GTTCAATCC 3326 ||||| ||||||| ||| | |||| ||||| || |||||||| || ||| || Sbjct 65 GAAGTTTTTGAGCCTCGTATGCTTGCCCGTGCTAAGGACTTGAAAGAGTCCGTTTAAGG- 123 Query 3327 TGATGTACTATATGCCTGGGAGTTTCTCCCAGGCTGACCAGTTTTCTACTTGATGTAACT 3386 ||||||| | | |||| |||||||||||||| ||||||||| Sbjct 124 TGATGTAATCACT--CTGG-----------------ACCAGTTTTCTACTCGATGTAACT 164 Query 3387 GGTCTAGGTGACACCTTTT---GGTGTCTCCtttttttGTTCAAACTTTGGAGG---TTT 3440 ||||||||||||||||||| |||||| | | ||||| ||||||||| | | ||| Sbjct 165 GGTCTAGGTGACACCTTTTTTAGGTGTCCC---TCTTTGT-CAAACTTTGAAAGGATTTT 220 Query 3441 TATGCGCCCTGTGTCTCGTCATTCTGTTAACAAGCATCGTTCTGCTAAGCAGTTTAAGCA 3500 ||| || || ||||||||| ||||||| ||||| || ||| | || ||| Sbjct 221 CATGAAACCCGTCTCTCGTCATGCTGTTAATAAGCACCGATCTTCGCGTGCTTTCCAGCG 280 Query 3501 CCATTCTCGTACTGTTGCGGCTGCTAATGTGGCTCTCAATCCTATGCGTGGCGGTTGGCG 3560 | || | || || || || ||||| | | | |||||||||||| || ||||| Sbjct 281 CAATACACGCACCGTGGCTAAAGCTAACCTCGGTGG---TCCTATGCGTGGTGGCTGGCG 337 Query 3561 TCTGTAATGCCTTGTTTTCATCCAATGCCCGCTGTGCGGATGTCGGATGGCTCGGTAAAG 3620 ||| | |||||||||| ||||| ||||| || || ||||| |||||| || |||||| Sbjct 338 TCTCTGATGCCTTGTTACCATCCTATGCCTGCCGTCAGGATGGTGGATGGTTCTGTAAAG 397 Query 3621 TTTGTAAGTAGGAATAAACGTGGCGTCGAAGGTACTCTCGAGTTACCATGTGGACAGTGT 3680 ||||| | | |||||| ||| || || || ||||| || | || || || || ||| Sbjct 398 TTTGTTTCTCGTAATAAAGTTGGTGTTGATGGAACTCTTGAACTTCCCTGCGGTCAATGT 457 Query 3681 ATCGGCTGCCGACTTGAACGGTCTCGGCAATGGGCTATGCGTTGTTTACACGAATCGACC 3740 || || ||| | ||||| || || || |||||||| ||||||||||| || || || | Sbjct 458 ATTGGATGCAGGCTTGAGCGTTCCCGACAATGGGCCATGCGTTGTTTGCATGAGTCCTCG 517 Query 3741 CTTTACGACCATAACTGTTTTATTACACTTACCTATGATGATTCCAATTTGCCCCCAGGC 3800 ||||| || | || | || || || |||||||| |||||| | | ||||||||| Sbjct 518 CTTTATGATCGGAATTCGTTCATCACTCTTACCTACGATGATGAACACATTCCCCCAGGC 577 Query 3801 GGTTCGTTAGATTATGCTGATTTTCAGAAGTTTATGAAACGATTACGTAA 3850 || || | ||| | || ||||| ||||||||||| | ||||| Sbjct 578 GGGTCCCTCTGGTATCCCGACTTTCAACGTTTTATGAAACGTCTTCGTAA 627 >seq1831 Length=490 Score = 221 bits (244), Expect = 3e-54 Identities = 313/433 (72%), Gaps = 19/433 (4%) Strand=Plus/Plus Query 3954 GATAAGGTGTATTTTAAGAAGACTTCTTCTGGCGAGAAGATTTATACTTCAAAGCTTTTA 4013 |||||||| |||||| || |||| ||||| || ||| |||| ||||| |||||| Sbjct 10 GATAAGGTTTATTTTCGTAAATCTTCATCTGGTGAAAAGCTTTACACTTCG--GCTTTTC 67 Query 4014 --GAGTCTTTATGGGCCATATGGCCTTTCTTAGCGTTGGTAATGTTTACCTTCGAGTCCG 4071 || || | ||| || ||||| | |||| |||| ||||| || || ||||| | Sbjct 68 TTGAATCCATTTGGCCC-TATGGTTTATCTTCTA-TTGGAAATGTG-ACTTTTGAGTCTG 124 Query 4072 CTGCCTATATTGCTAGGTATTGTGTTCAGAAGGTTACGGGTGATTTAGCTGAAGCACATT 4131 |||| ||||||||| | ||||||||| ||||| || ||||| ||| | | |||| Sbjct 125 CTGCTTATATTGCTCGTTATTGTGTTTCTAAGGTAACTGGTGACGCTGCTAAGTCTCATT 184 Query 4132 AT-CGTGTTATCACT--------GATGATGGTGAAATTATTGATCGTGTTC---CTGAAT 4179 || | ||| | | | | |||||||| ||| |||| ||||| |||| | Sbjct 185 ATTCATGTCCTGAATATGTGGATGCTGATGGTGTTATTTGTGATTCTGTTCAGCCTGAGT 244 Query 4180 TCAATCATATGTCACTTAAGCCCGGTATTGGTGCTAAGTGGTTAGAGAAGTTTCGGACTG 4239 | ||||||||||| || || |||||||| |||||| ||| | || || | || |||| Sbjct 245 TTAATCATATGTCTCTCAAACCCGGTATCGGTGCTGCTTGGCTTGATAAATATCAAACTG 304 Query 4240 ATGTTTTTCCTCGTGATTATGTGGTTATTAATGGTGTTAAGACTAAGCCTCCCAAATATT 4299 ||||||||||||||||||| || || |||||||||||||| |||||||| || |||| Sbjct 305 ATGTTTTTCCTCGTGATTACGTTATTGTTAATGGTGTTAAGGTCAAGCCTCCTAAGTATT 364 Query 4300 ATGACGTTTTGTTCGAGCGTGAGTATCCTGGTGTATTTTCAGAGATAGTTGCCCAGCGTG 4359 |||| |||||| || | || || || || |||||| |||||||| |||| ||||| Sbjct 365 ATGATTCTTTGTTTGAAAGAGATAATGCTCTTGAATTTTCCGAGATAGTCGCCCGGCGTG 424 Query 4360 AGCTTGATGGCTA 4372 || | ||||| || Sbjct 425 AGTTGGATGGTTA 437 >seq1674 Length=593 Score = 208 bits (230), Expect = 2e-50 Identities = 204/264 (77%), Gaps = 1/264 (0%) Strand=Plus/Minus Query 3054 GATTGCGGAGGCTG-TATGATTCAAGTTATTATTTCTGTTAAGGACACTGCTGCTCAGGC 3112 |||| |||| || |||| |||| ||||| |||| |||||||| ||||| |||||||| Sbjct 303 GATTTTGGAGATTGATATGCATCAAATTATTGTTTCCGTTAAGGATACTGCCGCTCAGGC 244 Query 3113 TTTTGGTCGTCCTATTTTTGTTCCNNNNNNNCCTGTTGCGCTTCGTGGTTTTCGTGATGA 3172 ||| ||||| ||| |||||||||| |||||||| | ||| ||||||||||| Sbjct 243 TTTCGGTCGCCCTGTTTTTGTTCCTTCTTCTGCTGTTGCGATCCGTTCGTTTCGTGATGA 184 Query 3173 GATTAATCGTAGTGATTCTACGGATGATCTTGCTCGTCATCCTGACGATTTTGAGCTTTA 3232 | ||||||| |||||||| |||||| | ||| |||||| |||||||| ||||| Sbjct 183 AGTGAATCGTAAAGATTCTACTGATGATTTGGCTAAGCATCCTTCTGATTTTGATCTTTA 124 Query 3233 TGAGATCGGTTCTTTTGATGATGCGACAGGTATCATTCAAGTTATTGAGCCGCGTCTTGT 3292 |||||| || || ||||||||| |||| || || ||| ||||| ||||||| ||| | | Sbjct 123 TGAGATTGGCTCCTTTGATGATTCGACTGGAATTATTGAAGTTTTTGAGCCTCGTATGCT 64 Query 3293 TGCTCGTGCAAAAGACTTGAAGGA 3316 ||| ||||| || |||||||| || Sbjct 63 TGCCCGTGCTAAGGACTTGAAAGA 40 >seq659 Length=566 Score = 185 bits (204), Expect = 2e-43 Identities = 194/251 (77%), Gaps = 7/251 (3%) Strand=Plus/Minus Query 386 CAAGACTATATGGGTTTACCAACTGTTGGTCAGGTTGGTGCTGGCAATACTATTTCCCAT 445 || |||||||||||| | || ||||||||||||||| ||||| | ||| |||| || Sbjct 561 CAGGACTATATGGGTCTTCCTACTGTTGGTCAGGTTACGGCTGGTCAGACTGTTTCACAC 502 Query 446 --TGCGCTTTTTTACTCGTGCCTATAATCTTATTTGGAATGAATGGTTTAGAGATCAGAA 503 ||| ||| ||||||||||| |||||| | |||| ||||||||||| | ||| | || Sbjct 501 AATGC-CTTGTTTACTCGTGCTTATAATTTAATTTATGATGAATGGTTTCGTGATGAAAA 443 Query 504 TTTACAAAATTCTGTAACCGTTGATACTGGTGACGGTCCTGATGCGTCGGCTTCAACTAA 563 ||| |||||| ||| | || |||| ||||| ||||||||| | || || | ||||| Sbjct 442 TTTGCAAAATGCTGCCATTGTGGATAAGGGTGATGGTCCTGATTCCTCCCCTGCTACTAA 383 Query 564 TTACACGTTGTT--GCGCCGTGGTAAGCGGCATGATTATTTTACTTCTGCACTTCCATGG 621 || | || || |||||||||||||| ||||||||||||||||||||| | || ||| Sbjct 382 TT--ATTTTCTTCGTCGCCGTGGTAAGCGACATGATTATTTTACTTCTGCATTGCCTTGG 325 Query 622 CCTCAGAAGGG 632 || || ||||| Sbjct 324 CCCCAAAAGGG 314 Score = 84.2 bits (92), Expect = 6e-13 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 838 GCTACTGCTGCAACTATTAATCAGTTGCGTCAGTCATTTCAGATTCAAAAACTTTTAGAG 897 || ||| |||| |||||||||||||||||||| || |||||||| ||||| | | || Sbjct 84 GCCACTTCTGCGACTATTAATCAGTTGCGTCAATCTTTTCAGATCCAAAAGTTGCTTGAA 25 Query 898 CGTGATGCTCGTGGTGGTACACGT 921 |||||||| ||||| ||||| ||| Sbjct 24 CGTGATGCCCGTGGCGGTACTCGT 1 >seq2459 Length=374 Score = 183 bits (202), Expect = 9e-43 Identities = 272/379 (72%), Gaps = 10/379 (3%) Strand=Plus/Minus Query 3693 CTTGAACGGTCTCGGCAATGGGCTATGCGTTGTTTACACGAATCGACCCTTTACGACCAT 3752 ||||| || || || |||||||| |||||||| ||||| || || | ||||| || Sbjct 372 CTTGAGCGTTCCCGACAATGGGCCATGCGTTGCTTACATGAGTCCTCGCTTTATGATAGG 313 Query 3753 AACTGTTTTATTACACTTACCTATGATGATTCCAATTTGCCCCCAGGCGGTTCGTTAGAT 3812 || | || || || ||||||||||||||| | | ||||||||||| || | Sbjct 312 AATTCGTTCATCACTCTTACCTATGATGATGAACACATTCCCCCAGGCGGGTCCCTCTGG 253 Query 3813 TATGCTGATTTTCAGAAGTTTATGAAACGATTACGTAAGCGTGTTAAGTCTCCAGTTCGG 3872 ||| | || ||||| ||||||||||| | ||||||| |||||||||| || || Sbjct 252 TATCCCGACTTTCAACGTTTTATGAAACGTCTTCGTAAGCAAATTAAGTCTCCCGTCCGT 193 Query 3873 TTTTATGTCGGCGGTGAGTATGGTGAGAATGGTACTATTCGTCCCCATTTTCATGCTTGT 3932 |||||| | || ||||||||||||||| ||| ||||| |||| |||||||||| Sbjct 192 TTTTATATGGGTGGTGAGTATGGTGAG---TCTACCGCGCGTCCTCATTATCATGCTTGT 136 Query 3933 TTATTCGGTTATGACTTTTTGGATAAGGTGTATTTTAAGAAGACTTCTTCTGGCGAGAAG 3992 || || ||||| || ||| |||||||| |||||| || || | ||||| || ||| Sbjct 135 TTGTTTGGTTACGATTTTCCCGATAAGGTTTATTTTCGTAAATCTCCATCTGGTGAAAAG 76 Query 3993 ATTTATACTTCAAAGCTTT--TAGAGTCTTTATGGGCCATATGGCCTTTCTTAGCGTTGG 4050 |||||||||| ||||| | || ||| | | |||| ||||| | |||| |||| Sbjct 75 CTTTATACTTC--GGCTTTTCTTGAATCTAT-TTGGCCCTATGGTTTATCTT-CTATTGG 20 Query 4051 TAATGTTTACCTTCGAGTC 4069 |||| | || || ||||| Sbjct 19 AAATG-TGACTTTTGAGTC 2 >seq1725 Length=528 Score = 170 bits (188), Expect = 5e-39 Identities = 183/243 (75%), Gaps = 1/243 (0%) Strand=Plus/Plus Query 3054 GATTGCGGAGGCTG-TATGATTCAAGTTATTATTTCTGTTAAGGACACTGCTGCTCAGGC 3112 |||| |||| || |||| |||| ||||| |||| || ||||| | ||| |||||||| Sbjct 284 GATTTTGGAGATTGATATGTATCAAATTATTGTTTCCGTCAAGGATAATGCCGCTCAGGC 343 Query 3113 TTTTGGTCGTCCTATTTTTGTTCCNNNNNNNCCTGTTGCGCTTCGTGGTTTTCGTGATGA 3172 ||| ||||| || |||||||||| |||||||| | ||| ||||||||||| Sbjct 344 TTTCGGTCGCCCCGTTTTTGTTCCCTCTTCTGCTGTTGCGATCCGTTCGTTTCGTGATGA 403 Query 3173 GATTAATCGTAGTGATTCTACGGATGATCTTGCTCGTCATCCTGACGATTTTGAGCTTTA 3232 | ||||||| |||||||| ||||| | ||| |||||| |||||||| ||||| Sbjct 404 AGTGAATCGTAAGGATTCTACTGATGACTTGGCTAAGCATCCTTCTGATTTTGATCTTTA 463 Query 3233 TGAGATCGGTTCTTTTGATGATGCGACAGGTATCATTCAAGTTATTGAGCCGCGTCTTGT 3292 |||||| || || ||||||||| |||| || || ||| ||||| ||||||| ||| | | Sbjct 464 TGAGATTGGCTCCTTTGATGATTCGACTGGAATTATTGAAGTTTTTGAGCCTCGTATGCT 523 Query 3293 TGC 3295 ||| Sbjct 524 TGC 526 >seq86 Length=1311 Score = 78.8 bits (86), Expect = 3e-11 Identities = 191/280 (68%), Gaps = 7/280 (3%) Strand=Plus/Plus Query 53 TTCCGCACGCTGACATTCCGCGTGCTAAGTTTGATCGTCAGTTTAC-TCATAAGACGACT 111 |||| | || || ||||||||| | |||| || || ||| |||||| || || Sbjct 482 TTCCTAAAGCGGAAATTCCGCGTTCACAGTTCGACCG-CAGCAGCGGTCATAAAACAACC 540 Query 112 TTTGATGCTGGTTATCTTGTTCCTGTT-TATGTGGATGAGGTTCTTCCCGGTGATACATT 170 ||||| || || ||||| ||| ||| | ||| |||||||| ||||| |||||||| || Sbjct 541 TTTGACGCCGGA-ATCTTAATCCCGTTCTTTGTCGATGAGGTCCTTCCAGGTGATACGTT 599 Query 171 TAATTTGAATATGACTGCTTTTGCTCGTCTGGCTACTCCTTTTTT-CCTGTTATGGATAA 229 || | || || || || || |||| || || || || || |||||||| Sbjct 600 CAACCTTCGTACAACGATCTTCGCGCGCTTGGCGACGCCGATTAAACCCGTGATGGATAA 659 Query 230 TATGGTTTTGGATAGTCtttttcttttttGTTCCTAACCGTTTGATTTGGGATAACTGGC 289 |||| ||| | || || ||| ||||| || || ||| | | ||||| ||||||| Sbjct 660 TATGTACGCGGACACTCAATT-CTTCTTTGTGCCGAATCGTCTTGTCTGGGACAACTGGC 718 Query 290 AAAAG-TTTATGGTGAGCAGCGTAACCCTGGTGATTCGAC 328 ||||| | | || ||||| ||||| ||||| || || Sbjct 719 AAAAGATGTGCGGCGAGCAAGACAACCCCGGTGACTCTAC 758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14184958123765