Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_028994.1 Length=4273 Score E Sequences producing significant alignments: (Bits) Value seq2517 372 8e-100 seq3324 262 1e-66 seq2790 215 1e-52 seq659 127 6e-26 seq4055 105 2e-19 seq1699 91.5 4e-15 >seq2517 Length=1311 Score = 372 bits (412), Expect = 8e-100 Identities = 570/809 (70%), Gaps = 4/809 (0%) Strand=Plus/Minus Query 847 TATGCAGATTTATCTGTAGCAACTGCGGCAACAATTAATCAATTACGTCAATCATTTCAG 906 ||||| || | || | || ||| | || || ||||| || | || ||||| |||||| Sbjct 1179 TATGCTGACCTTTCGGCCGCTACTTCTGCGACTATTAACCAGCTGCGCCAATCTTTTCAG 1120 Query 907 ATTCAAAAACTTCTTGAAAGGGATGCCCGTGGCGGTACTCGTTATACTGAAATTATACGC 966 || |||||| | ||||| | ||||| ||||||||||||||||||||||| ||| | || Sbjct 1119 ATCCAAAAATTACTTGAGCGAGATGCTCGTGGCGGTACTCGTTATACTGAGATTGTGCGT 1060 Query 967 TCACATTTTGGTGTTATTTCTCCTGATGCTCGCTTACAGCGTCCCGAGTACATCGGGGGT 1026 || ||||||||||| ||||||||||||| || | || || || || || | || ||| Sbjct 1059 TCTCATTTTGGTGTGGTTTCTCCTGATGCCCGACTTCAACGCCCTGAATATTTGGGCGGT 1000 Query 1027 GGATCAACCAATATTAATATTAATCCGATCGCTCAGACATCGGGTAGTAATGCTAGTGGA 1086 || || | ||||| ||||| || |||||||||| || || | | || || ||| Sbjct 999 GGCTCTTCTCCTATTATCATTAACCCTGTCGCTCAGACTTCTGGCACTGGTGTTACTGGT 940 Query 1087 ACTACTACCCCTATGGGCACACTTGCTGCTATGGGTACTGCCTTGGCTCATAATCATGGC 1146 | |||| ||| ||| | | || ||||| || |||| || ||| | ||||| Sbjct 939 GGTTCTACTCCTTTGGCTAATTTGGCCGCTATTGGCACTGGTTTAGCTTCTCGCCATGGT 880 Query 1147 TTTACTTACTCAGCTACTGAACATGGTGTCATTCTGGGATTAGTATCTGTACGTGCCGAT 1206 |||||| | ||| |||||||||||| | ||| | || || | | ||||||||||| Sbjct 879 TTTACTCAATCATTTACTGAACATGGAATGATTATCGGTTTGGCTAATATACGTGCCGAT 820 Query 1207 CTTACATACCAGCAAGGATTGCAGCGTATGTGGAGTCGTTCAACACGATACGATTTTTAT 1266 | || || || ||||| | | ||||||||| || || || || |||||||||||| Sbjct 819 TTGACCTATCAACAAGGTCTTGATCGTATGTGGTCGCGGTCTACTCGCTACGATTTTTAT 760 Query 1267 TTCCCAGCATTTGCAACCTTAGGTGAACAAGCCATACTCAATAAGGAAATTTATGTTACA 1326 || || || ||||| | | ||||||||||| | | || |||||||||||||| || Sbjct 759 TTTCCTGCGTTTGCGATGCTTGGTGAACAAGCTGTTTTGAACAAGGAAATTTATGTGACT 700 Query 1327 GGTA--GCT-CTGGGGATAATGATGTATTTGGTTATCAAGAACGCTGGGCAGAATACCGA 1383 |||| ||| | ||| || | ||| ||||| || || ||||| ||||| ||||| || Sbjct 699 GGTACTGCTGCCCAGGACAACGCTGTTTTTGGCTACCAGGAACGATGGGCCGAATATCGC 640 Query 1384 TATTATCCTAGCCGCATTTCAAGTTTGTTCCGTTCTACTGCTGCTGGAACTATTGATGCC 1443 ||| | ||| ||| || |||||| |||||| | |||||| | || ||| Sbjct 639 TATAAACCTTCTATGATTACATCCAAGTTCCGCAGCACTGCTTCGGGAACTTTGGACGCC 580 Query 1444 TGGCATCTTGCACAAAAATTCACTGCTACACCTACGTTGAATACAACGTTTATACAAGAC 1503 ||||| | || || || |||||| ||||| |||||||| || || || |||| Sbjct 579 TGGCACTTGGCGCAGCGTTTTACTGCTCTTCCTACTTTGAATACGACTTTCATCGAAGAT 520 Query 1504 ACACCACCAGTGAGTCGAGTAGTAGCAGTTGGAGCAGCTGCTAACGGACAACAATTTATT 1563 || || || ||| || || || || | ||| || ||||||||||| ||||||||| | Sbjct 519 ACTCCTCCTGTGTCGCGTGTCGTCGCTGCTGGTGCTGCTGCTAACGGTCAACAATTTTTG 460 Query 1564 TTTGATAGCTTTTTTGATTGTAAAAAAGCACGACCAATGCCAATGTACAGCGTACCTGGC 1623 ||||| |||||| ||||| | || ||||| ||||| |||| || || || Sbjct 459 TTTGACTCGTTTTTTAATTGTGTTACGGCTCGACCTATGCCGTTGTATTCTGTTCCCGGT 400 Query 1624 TTAATCGATCATTTCT-ATATGTTAGGCG 1651 || || || || |||| ||||| | |||| Sbjct 399 TTGATTGACCACTTCTAATATGCTCGGCG 371 >seq3324 Length=1042 Score = 262 bits (290), Expect = 1e-66 Identities = 358/500 (72%), Gaps = 0/500 (0%) Strand=Plus/Plus Query 1 ATGCATCGTAATAAGTCAGTAGACGTACACCAATTTACAATGATTCCGAAGGCTGATATA 60 |||||||||||| || || || || | ||| | |||||||| || ||||| Sbjct 542 ATGCATCGTAATCGTTCGGTCGATCCTCATCGTTTTGCGATGATTCCTCGCGCGGATATT 601 Query 61 CCTCGGAGTTCATTTGACTGTCAGTCAACACACAAAACTACTTTCGATGCCGGTTTCTTA 120 || || ||| ||| | |||| | || || ||||||||||| || || |||| || Sbjct 602 CCCCGTGCTTCTTTTAATCGTCAATTTACTCATAAAACTACTTTTGACGCTGGTTATTTG 661 Query 121 GTACCTGTATATGTAGATGAAATGTTGCCAGGCGATACTTTCCGCCTTAATATGACGGCA 180 | ||||| ||||| || ||| | | || || ||||| ||| ||| |||||| || Sbjct 662 ATTCCTGTTTATGTCGACGAAGTTCTTCCCGGTGATACGTTCAATCTTCGTATGACTGCT 721 Query 181 TTTGCCCGTTTAGCAACTCCTCTTTATCCAATTATGGATAATATGCACTTAGATTCATTC 240 ||||| ||||| || || ||| ||| ||| | |||||||||||||| || || | || Sbjct 722 TTTGCTCGTTTGGCTACGCCTATTTTTCCTACAATGGATAATATGCATTTGGACACTTTT 781 Query 241 TTTTTCTTTGTCCCAAATAGATTAATTTGGAACAATTGGCAAAAATTTATGGGTCAACAA 300 || || |||||||||||| | || | |||| |||||| || ||||||||| |||| Sbjct 782 TTCTTTTTTGTCCCAAATCGTTTGGTCTGGACAAATTGGGTTAAGTTTATGGGTGAACAG 841 Query 301 GCGAACCCTGATAGTTCGATTTCTTTTGTTGTACCCCAACAAGTATCACCTGCTGGTGGA 360 | || ||| | ||| ||||||| ||| |||| || ||||| || || | |||||| Sbjct 842 GATAATCCTTCTGATTCAATTTCTTATGTGATACCTCAGCAAGTTTCTCCAGTTGGTGGT 901 Query 361 TACGCTATTGGATCATTACAAGATTACATGGGTTTACCTACTGTTGGTCAAGTAGGTGCT 420 || |||||||| || | || ||||||||||| | ||||| ||||||||||| |||| Sbjct 902 TATGCTATTGGCTCGCTTCAGGATTACATGGGCCTTCCTACGGTTGGTCAAGTGACTGCT 961 Query 421 GGTAATACAGTAAGCCATTGTGCTTTTTGGCCACGTGCTTACAACCTTATATATAACGAG 480 ||| | || || || | |||||| | | |||||||| || | || ||| |||| Sbjct 962 GGTCAGACTGTTTCGCACTCTGCTTTGTTTACCCGTGCTTATAATTTGATTTATGACGAA 1021 Query 481 TGGTTTAGAGATGAAAATTT 500 |||||| | ||||||||||| Sbjct 1022 TGGTTTCGTGATGAAAATTT 1041 >seq2790 Length=1429 Score = 215 bits (238), Expect = 1e-52 Identities = 377/545 (69%), Gaps = 4/545 (1%) Strand=Plus/Plus Query 1111 GCTGCTATGGGTACTGCCTTGGCTCATAATCATGGCTTTACTTACTCAGCTACTGAACAT 1170 || ||||| ||||||| | | ||| | |||||| |||||| | ||| |||||||||| Sbjct 15 GCCGCTATAGGTACTGGCCTTGCTTCTCGTCATGGTTTTACTCAGTCATTTACTGAACAT 74 Query 1171 GGTGTCATTCTGGGATTAGTATCTGTACGTGCCGATCTTACATACCAGCAAGGATTGCAG 1230 || | ||| | || | | | ||||||||||| || || |||||||| ||| Sbjct 75 GGCATGATTATTGGTCTTGCGAACATTCGTGCCGATCTGACTTATCAGCAAGGTTTGTCT 134 Query 1231 CGTATGTGGAGTCGTTCAACACGATACGATTTTTATTTCCCAGCATTTGCAACCTTAGGT 1290 || |||||| ||||| || || || |||||||||||||| || ||||| | | ||| Sbjct 135 CGCATGTGGTCGCGTTCTACTCGTTATGATTTTTATTTCCCTGCTTTTGCTATGCTTGGT 194 Query 1291 GAACAAGCCATACTCAATAAGGAAATTTATGTTACAGGTA--GCT-CTGGGGATAATGAT 1347 |||||||| |||| ||||| || ||||||||||| || | ||| | ||| || Sbjct 195 GAACAAGCTGTACTTAATAAAGAGATTTATGTTACTGGCACTGCTGCCCAGGACAACTCG 254 Query 1348 GTATTTGGTTATCAAGAACGCTGGGCAGAATACCGATATTATCCTAGCCGCATTTCAAGT 1407 || || ||||||||||| || ||||| ||||| || ||| | || ||| || Sbjct 255 GTTTTCGGTTATCAAGAGCGGTGGGCCGAATATCGTTATAAACCGTCAATGATTACATCC 314 Query 1408 TTGTTCCGTTCTACTGCTGCTGGAACTATTGATGCCTGGCATCTTGCACAAAAATTCACT 1467 |||| | || ||| |||||||| | || || |||||| | || ||| || || Sbjct 315 AAGTTCAGAAGCACAGCTTCTGGAACTTTGGACGCTTGGCATTTGGCCCAACGTTTTACA 374 Query 1468 GCTACACCTACGTTGAATACAACGTTTATACAAGACACACCACCAGTGAGTCGAGTAGTA 1527 || ||||| ||||| | || ||||| | || || || ||||| ||| || || Sbjct 375 TCTTTGCCTACTTTGAACTCCACTTTTATTGAGGATACTCCTCCAGTTGCTCGGGTTGTT 434 Query 1528 GCAGTTGGAGCAGCTGCTAACGGACAACAATTTATTTTTGATAGCTTTTTTGATTGTAAA 1587 || | ||| | ||||| || ||||| ||| | |||||| |||||| ||||| Sbjct 435 GCTGCTGGTACTCAAGCTAATGGTCAACAGTTTTTATTTGATTCGTTTTTTAATTGTGTT 494 Query 1588 AAAGCACGACCAATGCCAATGTACAGCGTACCTGGCTTAATCGATCATTTCT-ATATGTT 1646 | || || |||||||| |||| || || || ||||| |||||||||| ||||| | Sbjct 495 ACTGCTCGCCCAATGCCTTTGTATTCTGTCCCCGGTTTAATTGATCATTTCTAATATGCT 554 Query 1647 AGGCG 1651 |||| Sbjct 555 TGGCG 559 >seq659 Length=566 Score = 127 bits (140), Expect = 6e-26 Identities = 203/289 (70%), Gaps = 13/289 (4%) Strand=Plus/Minus Query 379 CAAGATTACATGGGTTTACCTACTGTTGGTCAAGTAGGTGCTGGTAATACAGTAAGCCAT 438 || || || |||||| | |||||||||||||| || |||||| | || || || Sbjct 561 CAGGACTATATGGGTCTTCCTACTGTTGGTCAGGTTACGGCTGGTCAGACTGTTTCACAC 502 Query 439 TGTGCTTTTTGGCCACGTGCTTACAACCTTATATATAACGAGTGGTTTAGAGATGAAAAT 498 ||| || | | |||||||| || | || ||| | || |||||| | ||||||||| Sbjct 501 AATGCCTTGTTTACTCGTGCTTATAATTTAATTTATGATGAATGGTTTCGTGATGAAAAT 442 Query 499 TTACAAAACTCTGTTACCGTTGATCTTGGTGATGGCCCTGAT------ACTGTTACTAAC 552 || ||||| ||| | || ||| |||||||| |||||| ||| |||||| Sbjct 441 TTGCAAAATGCTGCCATTGTGGATAAGGGTGATGGTCCTGATTCCTCCCCTGCTACTAAT 382 Query 553 TATACTTTATT--ACGACGTGGAAAACGAAAAGATTACTTTACTTCTGCCCTTCCTTGGC 610 ||| ||| || || ||||| || ||| | ||||| ||||||||||| | ||||||| Sbjct 381 TAT--TTTCTTCGTCGCCGTGGTAAGCGACATGATTATTTTACTTCTGCATTGCCTTGGC 324 Query 611 CTCAAAA---AGGTACTTCTGTAACGTTACCATTAGGAACTTCTGCACC 656 | ||||| ||||||| || || | || || || ||||||||||| Sbjct 323 CCCAAAAGGGAGGTACTAGCGTTACCCTTCCTTTGGGCACTTCTGCACC 275 Score = 95.1 bits (104), Expect = 3e-16 Identities = 82/102 (80%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 847 TATGCAGATTTATCTGTAGCAACTGCGGCAACAATTAATCAATTACGTCAATCATTTCAG 906 ||||| ||| | || | || ||| | || || |||||||| || |||||||| |||||| Sbjct 102 TATGCTGATCTTTCGGCTGCCACTTCTGCGACTATTAATCAGTTGCGTCAATCTTTTCAG 43 Query 907 ATTCAAAAACTTCTTGAAAGGGATGCCCGTGGCGGTACTCGT 948 || ||||| | |||||| | ||||||||||||||||||||| Sbjct 42 ATCCAAAAGTTGCTTGAACGTGATGCCCGTGGCGGTACTCGT 1 >seq4055 Length=2357 Score = 105 bits (116), Expect = 2e-19 Identities = 114/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 843 TTTATATGCAGATTTATCTGTAGCAACTGCGGCAACAATTAATCAATTACGTCAATCATT 902 ||||| ||||| |||||| ||| ||||| || ||| ||||| | ||| | | || Sbjct 1622 TTTATGAGCAGACTTATCTAAAGCCACTGCTGCTACAGTTAATGATTTAAGGTTTGCTTT 1563 Query 903 TCAGATTCAAAAACTTCTTGAAAGGGATGCCCGTGGCGGTACTCGTTATACTGAAATTAT 962 ||| | |||||| | |||||| ||||| || || |||||||||||||||||| | | Sbjct 1562 TCAATTACAAAAAATGTATGAAAGAGATGCACGCGGTGGTACTCGTTATACTGAATTATT 1503 Query 963 ACGCTCACATTTTGGTGTTATTTCTCCTGAT 993 || ||||||||||||||| |||| || ||| Sbjct 1502 ACATTCACATTTTGGTGTTGTTTCACCAGAT 1472 >seq1699 Length=664 Score = 91.5 bits (100), Expect = 4e-15 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 910 CAAAAACTTCTTGAAAGGGATGCCCGTGGCGGTACTCGTTATACTGAAATTATACGCTCA 969 ||| |||| || ||| | || ||||| ||||| ||||| || |||||||| || | ||| Sbjct 596 CAACAACTCCTCGAACGTGACGCCCGCGGCGGCACTCGGTACACTGAAATCATTCACTCT 537 Query 970 CATTTTGGTGTTATTTCTCCTGATGCTCGCTTACAGCGTCCCGAGTACATCGGGGGTGGA 1029 || || || || | |||||||| || ||| | || || |||||||||||||| || ||| Sbjct 536 CACTTCGGCGTGGTCTCTCCTGACGCACGCCTTCAACGCCCCGAGTACATCGGCGGCGGA 477 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 13560986358790