Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_030457.1 Length=2651 Score E Sequences producing significant alignments: (Bits) Value seq3686 107 3e-20 >seq3686 Length=1607 Score = 107 bits (118), Expect = 3e-20 Identities = 129/172 (75%), Gaps = 4/172 (2%) Strand=Plus/Plus Query 866 GCGTGGGAAGAAGCCGGACCAGGTGCCTATTCTAAAGATCCACGCAGCAAATTTTGGTGT 925 || |||||||||||||| | | || ||||||||||||||| | | |||||||||| | Sbjct 9 GCCTGGGAAGAAGCCGGTCTCGAAGCTTATTCTAAAGATCCAAGGACCAAATTTTGGGAT 68 Query 926 GGCTA--CCGCTCTGACGAACATGTTGTTATCGATGAATTTAGAGGTGGTATCGATATCT 983 || || | | || | |||| |||||| ||||||||||| |||| ||||||| ||| Sbjct 69 GGGTATTCAGGTCAGG-GAAC-TGTTGTCCTCGATGAATTTCGAGGAAGTATCGACATCA 126 Query 984 CCCACTTGTTGCGATGGTTGGATAGGTATCCAGTCCGCGTTGAGATCAAAGG 1035 ||| | |||||||| | |||| ||| || || || || ||| |||| || Sbjct 127 GTCACCTCCTGCGATGGCTCGATAAGTACCCTGTTCGAGTGGAGGTCAAGGG 178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8374031898014