Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_030458.1 Length=5016 Score E Sequences producing significant alignments: (Bits) Value seq2517 136 1e-28 seq2790 131 5e-27 seq3440 95.1 4e-16 >seq2517 Length=1311 Score = 136 bits (150), Expect = 1e-28 Identities = 355/524 (68%), Gaps = 38/524 (7%) Strand=Plus/Minus Query 3267 CTTTTCAGATGCAGAGACTGAAGGAGCGTGACGCGCGTGGTGGAACTCGTTATACCGAGA 3326 |||||||||| || | | | ||||| || || ||||| || ||||||||||| |||| Sbjct 1127 CTTTTCAGATCCAAAAATTACTTGAGCGAGATGCTCGTGGCGGTACTCGTTATACTGAGA 1068 Query 3327 TACTTCGCGCTCATTTTGGCGTTGTCTCTCCCGATAGTCGACTTCAGCGTCCTGAGTATC 3386 | | || |||||||||| || || ||||| ||| |||||||| || ||||| ||| Sbjct 1067 TTGTGCGTTCTCATTTTGGTGTGGTTTCTCCTGATGCCCGACTTCAACGCCCTGAATAT- 1009 Query 3387 TTGGTGGCGGTGAGATACCGCTCATTGTCTCGT-----CTGTTCCGCAGACTTC------ 3435 |||| |||||| | | | ||| | | || | |||| | |||||||| Sbjct 1008 TTGG--GCGGTG-GCT-CTTCTCCTATTATCATTAACCCTGTCGCTCAGACTTCTGGCAC 953 Query 3436 --GTCTT-CGGACGCTACTACTCCGCAGGGAAACCTTGCCGCCTACT----CTGTGTTTA 3488 || || | | | | ||||||| || || | ||||| || | ||| ||||| Sbjct 952 TGGTGTTACTGGTGGTTCTACTCCTTTGGCTAATTTGGCCGC-TATTGGCACTG-GTTTA 895 Query 3489 G-TGGTCGCAATACTTGCAGGTGGACTAAGTCGTTTGTCGAACACGGCGTTGTTATTGGT 3547 | | |||| || || | || | || ||| ||||| || | |||| ||| Sbjct 894 GCTTCTCGCCATGGTTTTA------CTCAATCATTTACTGAACATGGAATGATTATCGGT 841 Query 3548 CTTTGCTC-TGTTCGAGCCGACCTTGAA-TATCAGCAGGGTCTTAATCGGATGTGGTCGC 3605 || ||| | | || ||||| |||| ||||| || |||||| |||| |||||||||| Sbjct 840 -TTGGCTAATATACGTGCCGAT-TTGACCTATCAACAAGGTCTTGATCGTATGTGGTCGC 783 Query 3606 GTAGGACGCGCTATGACTTCTATTGGCCTGCCCTCGCAAATCTTGGTGAACAGGCCGTGC 3665 | || ||||| || || |||| ||||| | || | ||||||||||| || || Sbjct 782 GGTCTACTCGCTACGATTTTTATTTTCCTGCGTTTGCGATGCTTGGTGAACAAGCTGTTT 723 Query 3666 TTAACAAAGAGATTTATGCCGATTCG-ACCGACGGCAAGGATGATGAGGTTTTTGGCTAT 3724 | ||||| || ||||||| || | | || | | | |||| | | ||||||||||| Sbjct 722 TGAACAAGGAAATTTATG-TGACTGGTACTGCTGCCCAGGACAACGCTGTTTTTGGCTAC 664 Query 3725 CAAGAGAGGTGGAGCGAGTATCGCTATAAGCCCTCTATGATTAC 3768 || || | ||| ||| ||||||||||| || ||||||||||| Sbjct 663 CAGGAACGATGGGCCGAATATCGCTATAAACCTTCTATGATTAC 620 >seq2790 Length=1429 Score = 131 bits (144), Expect = 5e-27 Identities = 183/257 (71%), Gaps = 0/257 (0%) Strand=Plus/Plus Query 3512 ACTAAGTCGTTTGTCGAACACGGCGTTGTTATTGGTCTTTGCTCTGTTCGAGCCGACCTT 3571 ||| |||| ||| ||||| ||| | ||||||||||| |||| ||||| || Sbjct 54 ACTCAGTCATTTACTGAACATGGCATGATTATTGGTCTTGCGAACATTCGTGCCGATCTG 113 Query 3572 GAATATCAGCAGGGTCTTAATCGGATGTGGTCGCGTAGGACGCGCTATGACTTCTATTGG 3631 |||||||| ||| | ||| |||||||||||| || || ||||| || |||| Sbjct 114 ACTTATCAGCAAGGTTTGTCTCGCATGTGGTCGCGTTCTACTCGTTATGATTTTTATTTC 173 Query 3632 CCTGCCCTCGCAAATCTTGGTGAACAGGCCGTGCTTAACAAAGAGATTTATGCCGATTCG 3691 ||||| | || | ||||||||||| || || ||||| ||||||||||||| | Sbjct 174 CCTGCTTTTGCTATGCTTGGTGAACAAGCTGTACTTAATAAAGAGATTTATGTTACTGGC 233 Query 3692 ACCGACGGCAAGGATGATGAGGTTTTTGGCTATCAAGAGAGGTGGAGCGAGTATCGCTAT 3751 || | | | |||| | |||||| || ||||||||| ||||| ||| ||||| ||| Sbjct 234 ACTGCTGCCCAGGACAACTCGGTTTTCGGTTATCAAGAGCGGTGGGCCGAATATCGTTAT 293 Query 3752 AAGCCCTCTATGATTAC 3768 || || || |||||||| Sbjct 294 AAACCGTCAATGATTAC 310 >seq3440 Length=2028 Score = 95.1 bits (104), Expect = 4e-16 Identities = 158/225 (70%), Gaps = 4/225 (2%) Strand=Plus/Plus Query 3563 GCCGACCTTGAATATCAGCAGGGTCTTAATCGGATGTGGTCGCGTAGGACGCGCTATGAC 3622 |||||||| |||||||||||||| |||||| ||| | || | ||||| | || Sbjct 617 GCCGACCTGACGTATCAGCAGGGTCTGCATCGGACCTGGACTCGCAAAACGCGTTTCGAT 676 Query 3623 TTCTATTGGCCTGCCCTCGCAAATCTTGGTGAACAGGCCGTGCTTAACAAAGAGATTTA- 3681 ||||||||||| | |||| || | || ||||||||||||| ||| | || || || Sbjct 677 TTCTATTGGCCCACGTTCGCCAACTTGGGCGAACAGGCCGTGCGAAACGACGAAATCTAC 736 Query 3682 TGCCGATTCGA-CCGACGGCAAGGATGATGAGGTTTTTGGCTATCAAGAGAGGTGGAGCG 3740 || | || |||| | |||||| | ||| || |||||||| || ||||| | Sbjct 737 TG--TACGGGAGTGGACGTTACGGATGAAGCGGTCTTCGGCTATCAGGAACGGTGGGCAG 794 Query 3741 AGTATCGCTATAAGCCCTCTATGATTACTGGCAAGCTGCGTTCTA 3785 |||||||||| ||| ||| ||||| ||| | | ||||||| Sbjct 795 AGTATCGCTACCGGCCATCTCAAATTACCGGCCTGTTCCGTTCTA 839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15938478776105