Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_030469.1 Length=2433 Score E Sequences producing significant alignments: (Bits) Value seq3686 118 2e-23 >seq3686 Length=1607 Score = 118 bits (130), Expect = 2e-23 Identities = 135/179 (75%), Gaps = 2/179 (1%) Strand=Plus/Plus Query 1387 GCCTGGGAAGAAGCCGGT-TGGACTGCTTATCCTAAAGATCCGAGAAGCAAATTTTGGGA 1445 |||||||||||||||||| | || |||||| |||||||||| || | |||||||||||| Sbjct 9 GCCTGGGAAGAAGCCGGTCTCGA-AGCTTATTCTAAAGATCCAAGGACCAAATTTTGGGA 67 Query 1446 TGGATACTCAGATCAGAAGAATGTTGTATTTGATGAATTTCGAGGAGGAATCGATATTTC 1505 ||| || |||| |||| | |||||| | ||||||||||||||| | ||||| || Sbjct 68 TGGGTATTCAGGTCAGGGAACTGTTGTCCTCGATGAATTTCGAGGAAGTATCGACATCAG 127 Query 1506 CCATATATTGCGATGGTTTGATCGCTACCCAGTACTCGTTGAAATCAAGGGAGCTTCAA 1564 || | |||||||| | ||| ||||| || | || || ||||||| | |||| Sbjct 128 TCACCTCCTGCGATGGCTCGATAAGTACCCTGTTCGAGTGGAGGTCAAGGGTTCATCAA 186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7676462561458