Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_030472.1 Length=4851 Score E Sequences producing significant alignments: (Bits) Value seq2790 140 1e-29 seq2517 114 4e-22 seq3440 80.6 8e-12 >seq2790 Length=1429 Score = 140 bits (154), Expect = 1e-29 Identities = 188/258 (73%), Gaps = 8/258 (3%) Strand=Plus/Plus Query 3397 AGTCTTTTGTTGAGCATGGCGTTGTTATAGGTCTATGCTCTG-TTCGTGCAGACCTAGAA 3455 |||| ||| ||| |||||| | |||| ||||| ||| ||||||| || || Sbjct 58 AGTCATTTACTGAACATGGCATGATTATTGGTCT-TGCGAACATTCGTGCCGATCTGACT 116 Query 3456 TATCAGCAGGGTCTTAATCGGATGTGGTCGCGTAGAACGCGTTATGATTTCTATTGGCCC 3515 |||||||| ||| | ||| |||||||||||| || ||||||||||| |||| || Sbjct 117 TATCAGCAAGGTTTGTCTCGCATGTGGTCGCGTTCTACTCGTTATGATTTTTATTTCCCT 176 Query 3516 GCTCTTGCTAATCTTGGTGAACAGGCTGTGCTTAATAAGGAACTCTATGCCGATTCTG-- 3573 ||| |||||| ||||||||||| ||||| |||||||| || | ||| | | ||| Sbjct 177 GCTTTTGCTATGCTTGGTGAACAAGCTGTACTTAATAAAGAGATTTAT---GTTACTGGC 233 Query 3574 -CCGATGGGAAGGACGATGACGTTTTTGGTTATCAAGAGAGGTGGAGCGAGTATCGCTAT 3632 | | || ||||| | ||||| |||||||||||| ||||| ||| ||||| ||| Sbjct 234 ACTGCTGCCCAGGACAACTCGGTTTTCGGTTATCAAGAGCGGTGGGCCGAATATCGTTAT 293 Query 3633 AAGCCCTCTATGATTACA 3650 || || || ||||||||| Sbjct 294 AAACCGTCAATGATTACA 311 >seq2517 Length=1311 Score = 114 bits (126), Expect = 4e-22 Identities = 464/727 (64%), Gaps = 37/727 (5%) Strand=Plus/Minus Query 3171 GAGCGTGACGCTCGCGGTGGAACTCGTTATACTGAAATTCTTCGTGCGCATTTTGGCGTT 3230 ||||| || ||||| || || |||||||||||||| ||| | ||| | |||||||| || Sbjct 1104 GAGCGAGATGCTCGTGGCGGTACTCGTTATACTGAGATTGTGCGTTCTCATTTTGGTGTG 1045 Query 3231 GTTTCGCCTGATAGTAGGCTTCAGCGTCCAGAATATCTTGGCGGAGGTGAAATCCCGCTT 3290 ||||| |||||| | ||||| || || |||||| | ||||| || || || Sbjct 1044 GTTTCTCCTGATGCCCGACTTCAACGCCCTGAATATTTGGGCGGTGGCTCTTCTCCTATT 985 Query 3291 ATCGTCTCGTCTGTTCCGCAGACCTC---------TTCTACCGACGCTACAACTCCGCAA 3341 ||| | |||| | ||||| || | ||| | | | | ||||| Sbjct 984 ATCATTAACCCTGTCGCTCAGACTTCTGGCACTGGTGTTACTGGTGGTTCTACTCCTTTG 925 Query 3342 GGAAATCTTGCTGCCTATT----CTGTTTTTAGTGGGCGAAATACTTGTCGTTGGACGAA 3397 | ||| | || | ||||| ||| ||| | || | | ||| || | Sbjct 924 GCTAATTTGGCCG-CTATTGGCACTGGTTTAGCTTCTCGCCA------TGGTTTTACTCA 872 Query 3398 GTCTTTTGTTGAGCATGGCGTTGTTATAGGTCTATGCT-CTGTTCGTGCAGACCTAGAAT 3456 || ||| ||| ||||| | |||| ||| | ||| | | ||||| || | | Sbjct 871 ATCATTTACTGAACATGGAATGATTATCGGT-TTGGCTAATATACGTGCCGATTTGACCT 813 Query 3457 ATCAGCAGGGTCTTAATCGGATGTGGTCGCGTAGAACGCGTTATGATTTCTATTGGCCCG 3516 |||| || |||||| |||| ||||||||||| || || || ||||| |||| || | Sbjct 812 ATCAACAAGGTCTTGATCGTATGTGGTCGCGGTCTACTCGCTACGATTTTTATTTTCCTG 753 Query 3517 CTCTTGCTAATCTTGGTGAACAGGCTGTGCTTAATAAGGAACTCTATG---CCGATTCTG 3573 | |||| | ||||||||||| ||||| | || |||||| | |||| | | | ||| Sbjct 752 CGTTTGCGATGCTTGGTGAACAAGCTGTTTTGAACAAGGAAATTTATGTGACTGGTACTG 693 Query 3574 CCGATGGGAAGGACGATGACGTTTTTGGTTATCAAGAGAGGTGGAGCGAGTATCGCTATA 3633 | || ||||| | | |||||||| || || || | ||| ||| |||||||||| Sbjct 692 C---TGCCCAGGACAACGCTGTTTTTGGCTACCAGGAACGATGGGCCGAATATCGCTATA 636 Query 3634 AGCCCTCTATGATTACAGGTAAACTTCGTTCTAATGACCCGCAGTCTCTTGATGTTTGGC 3693 | || |||||||||||| || | || | || || || | || | |||| Sbjct 635 AACCTTCTATGATTACATCCAAGTTCCGCAGCACTGCTTCGGGAACTTTGGACGCCTGGC 576 Query 3694 ATTTGGCTCAAAATTTTACGACGCGTCCCACGCTTTCTTCTGATTTCATCAAGGACGCTC 3753 | ||||| || |||||| | | ||| || | | | ||||||| | || ||| Sbjct 575 ACTTGGCGCAGCGTTTTACTGCTCTTCCTACTTTGAATACGACTTTCATCGAAGATACTC 516 Query 3754 CGCCTATTAGTCGTGTGCTTGCT----GTGCAG-----GACGAACCTCAATTTGTTTGTG 3804 | ||| | ||||| | ||| |||| | ||| | |||||| | | || Sbjct 515 CTCCTGTGTCGCGTGTCGTCGCTGCTGGTGCTGCTGCTAACGGTCAACAATTTTTGTTTG 456 Query 3805 ATTTTCATTTCACTTGTAAATGTGCTCGTCCTATGCCTGTTTATTCTGTTCCTGGTTTGA 3864 | | ||| | |||| ||||| |||||||| | ||||||||||| ||||||| Sbjct 455 ACTCGTTTTTTAATTGTGTTACGGCTCGACCTATGCCGTTGTATTCTGTTCCCGGTTTGA 396 Query 3865 TTGACCA 3871 ||||||| Sbjct 395 TTGACCA 389 >seq3440 Length=2028 Score = 80.6 bits (88), Expect = 8e-12 Identities = 147/212 (69%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 3443 TGCAGACCTAGAATATCAGCAGGGTCTTAATCGGATGTGGTCGCGTAGAACGCGTTATGA 3502 ||| ||||| |||||||||||||| |||||| ||| | || | |||||||| || Sbjct 616 TGCCGACCTGACGTATCAGCAGGGTCTGCATCGGACCTGGACTCGCAAAACGCGTTTCGA 675 Query 3503 TTTCTATTGGCCCGCTCTTGCTAATCTTGGTGAACAGGCTGTGCTTAATAAGGAACTCTA 3562 ||||||||||||| | | || || | || |||||||| |||| || | ||| |||| Sbjct 676 TTTCTATTGGCCCACGTTCGCCAACTTGGGCGAACAGGCCGTGCGAAACGACGAAATCTA 735 Query 3563 -TG-CCGATTCTGCCGATGGGAAGGACGATGACGTTTTTGGTTATCAAGAGAGGTGGAGC 3620 || || || || | | ||| || | || || || ||||| || ||||| Sbjct 736 CTGTACGGGAGTG--GACGTTACGGATGAAGCGGTCTTCGGCTATCAGGAACGGTGGGCA 793 Query 3621 GAGTATCGCTATAAGCCCTCTATGATTACAGG 3652 ||||||||||| ||| ||| ||||| || Sbjct 794 GAGTATCGCTACCGGCCATCTCAAATTACCGG 825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15410502667280