Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astrammina_20rara_20[genbank_20GCA_5F000211355.2_202011-04-27] 3,231 sequences; 1,450,095 total letters Query= NC_002180.1 Length=4532 Score E Sequences producing significant alignments: (Bits) Value seq2 107 6e-20 seq3 89.7 1e-14 >seq2 Length=2125 Score = 107 bits (118), Expect = 6e-20 Identities = 480/766 (63%), Gaps = 32/766 (4%) Strand=Plus/Plus Query 1052 CTTCGTGAAGCTTTCCAATTGCAAAAGCTTTATGAGAGAGATGCTCGTGGCGGAACAAGG 1111 ||||| |||| |||||| | ||| || | || | || || ||||||||||| | Sbjct 1249 CTTCGACAAGCGTTCCAAGTACAACGCCTCTTAGAACGTGACGCCCGTGGCGGAACTCGA 1308 Query 1112 TACATTGAGATTATTCGTTCCCATTTCAATGTGCAGTCTCCAGATGCAAGGTTGCAACGT 1171 ||||| ||| |||| || || ||| || ||||| || ||| | || ||||| Sbjct 1309 TACATCGAGCTTATAAAATCTCACTTCGGCGTCTCTTCTCCTGACGCACGATTACAACGC 1368 Query 1172 GCAGAGTATCTTGGAGGTTCTTCAACTCCTGTGAATATTTCTCCGATTCCACAGACTTCC 1231 | || || || || || || | || || || ||| | ||| | |||| || Sbjct 1369 CCCGAATACCTCGGCGGCGGCTCTAGCCCGGTAAACATTACCCCGGTAACACAACAATCT 1428 Query 1232 TCAACAGACTCCACATCTCCTCAAGGAAATCTTGCTGCTTATGGTACAGCGATTGGATCG 1291 | | ||| | || | |||||||| || ||||| | | |||||||| | ||| Sbjct 1429 GCCTCTGACGCTACTACGCCTCAAGGCAACCTTGCAGGCTTCGGTACAGCCACCCT-TCG 1487 Query 1292 AAGCGA-GTCTTCACAAAGTCTTTCACAGAACATGGTGTAATTCTTGGATTAGCCTCTGT 1350 | | | |||| |||| || ||||| ||||| | | || |||| | | ||| || Sbjct 1488 CGGTCACGGCTTCTCAAAATCCTTCACCGAACACTGCATTATCATTGGCATGGTCTCCGT 1547 Query 1351 ACGCGCCGATCTCAACTATCAGCAAGGTTTGGATAGGATGTGGTCACGAAGAACGCGCTG 1410 || |||||||| | ||||||||| || | | | |||| || || ||| |||| Sbjct 1548 CCGTGCCGATCTAACCTATCAGCAGGGCCTTAACCGCATGTTCTCGCGTTCAACACGCTA 1607 Query 1411 GGACTTTTACTGGCCTGCTCTTAGCCATTTAGGTGAGCAAGCTGTGCTCAATAAAGAGAT 1470 ||||| ||||||||||| || || | || || ||| | | || |||||||| || Sbjct 1608 TGACTTCTACTGGCCTGCACTCTCTCACCTGGGCGAACAATCCATACTTAATAAAGAAAT 1667 Query 1471 CTATTGCCAAGGTCCTGCAGTTAAGGATGCTCAGAATGGTAATGTTGTTGTGGATGAGCA 1530 || || | ||| |||| | | ||||| Sbjct 1668 CTTTTCTGATGGTTCTGCCACTGACGATGC------------------------------ 1697 Query 1531 AGTCTTTGGATATCAGGAGAGATTTGCGGAGTATCGCTATAAGACTTCGAAAATCACTGG 1590 ||||| || ||||| || | | |||||| || |||||||| |||| | || || Sbjct 1698 CGTCTTCGGCTATCAAGAACGCTATGCGGAATACCGCTATAAACCTTCTACTATTACCTC 1757 Query 1591 GAAGTTCCGATCAAATGCTACAGGTTCTTTAGATGCATGGCATTTAGCTCAGCAGTTTGA 1650 ||||| || ||||| || | ||| | ||||| ||||| | | || | || | Sbjct 1758 TCTCTTCCGGTCCAATGCGACCGCTTCACTCGATGCTTGGCACCTGTCCCAAGACTTCGC 1817 Query 1651 GAATCTTCCAACACTTTCTCCAGAGTTTATCGAAGAAAATCCTCCTATGGATCGTGTTGT 1710 | ||| ||| ||||| ||| || || ||||| ||||| || || || | |||| Sbjct 1818 AACTCTACCAGCACTTAATCCTTCATTCATTGAAGACAATCCACCAATCGACAGAATTGT 1877 Query 1711 TGCTGTAGATACTGAGCCAGATTTTCTCTTAGATGGTTGGTTTTCATTGCGTTGTGCAAG 1770 || || | | || || || ||| |||| ||| | ||||| || |||| | | Sbjct 1878 CGCCGTTCCTTCGGAACCCGACTTTATCTTCGATTCACACATGTCATTACGATGTGTACG 1937 Query 1771 ACCAATGCCTGTCTATTCTGTTCCAGGTCTTATTGATCATTTCTAA 1816 || |||||||| || || || || || | ||||| ||||||||| Sbjct 1938 TCCTATGCCTGTGTACTCCGTACCCGGCTTAATTGACCATTTCTAA 1983 >seq3 Length=2115 Score = 89.7 bits (98), Expect = 1e-14 Identities = 262/404 (65%), Gaps = 0/404 (0%) Strand=Plus/Plus Query 255 TAAAGACTACATTCGACGCCGGTTACCTAATCCCTATCTTTTGCGATGAAGTTCTCCCTG 314 |||| ||||| ||||||||||| | ||||||||||| || ||| || | | | |||| Sbjct 508 TAAAAACTACTTTCGACGCCGGAAAACTAATCCCTATACTTGTCGACGAGGCTTTGCCTG 567 Query 315 GAGATACTTTCTCCTTGAAAGAGGCGTTTTTAGCACGTATGGCTACGCCTATCTTTCCTC 374 |||| || ||| || || | | ||| |||||| | || || ||||| ||| Sbjct 568 GAGACACCTTCAAATTAAACATGACTGCTTTCGCACGTCTTGCCACACCTATAAATCCCA 627 Query 375 TTATGGATAATTTGCGTTTAGATACGCAGTATTTCTTTGTTCCTCTTCGACTTATATGGT 434 | ||||| ||| || | || ||||| | |||| ||| ||| | || ||| | ||| Sbjct 628 TCATGGACAATATGTACATGGACACGCACTTCTTCTCTGTCCCTATGCGTCTTCTCTGGG 687 Query 435 CGAATTTCCAAAAGTTCTGTGGAGAACAAGATAATCCTGGAGATTCCACAGATTTTCTTA 494 || | ||||| ||| ||||||||| | ||||| || |||| || | ||| | Sbjct 688 ATAACTGGCAAAAATTCAACGGAGAACAAATCGACCCTGGCGACTCCATTGACTATCTAA 747 Query 495 CCCCAGTTTTAACCGCTCCTAGTGGGGGATTTACTGAAGGATCAATCCATGATTATCTTG 554 ||| | | ||||| ||| || | | || || ||||| ||||| | | Sbjct 748 TCCCTACTACCAATGCTCCCGCTGGCGGTTACGCCGAGGGTTCAATGTCCGATTACTTCG 807 Query 555 GTCTACCTACTAAAGTTGCAGGAATTGAATGTGTTGCGTTCTGGCACAGAGCTTACAATT 614 | | || ||||||||| | | ||| ||| | ||||| |||| |||||| Sbjct 808 GCATTCCCACTAAAGTTCCCAACTTAGAACACTCTGCTATGTGGCATCGAGCCTACAATC 867 Query 615 TGATTTGGAACCAGTACTATCGTGATGAGAATATTCAGGAATCT 658 | | |||||| | | | ||||| || ||| |||| || ||| Sbjct 868 TCGTCTGGAACGAATGGTTCCGTGACGAAAATCTTCAAGACTCT 911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14389891456755