Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astrammina_20rara_20[genbank_20GCA_5F000211355.2_202011-04-27] 3,231 sequences; 1,450,095 total letters Query= NC_002194.1 Length=4563 Score E Sequences producing significant alignments: (Bits) Value seq2 134 4e-28 seq9 84.2 6e-13 seq3 84.2 6e-13 >seq2 Length=2125 Score = 134 bits (148), Expect = 4e-28 Identities = 511/804 (64%), Gaps = 26/804 (3%) Strand=Plus/Plus Query 896 TTTATGCGGATTTAGGTGCAACTTCTCCTGTGACGATCAATTCTCTTCGTGAAGCCTTCC 955 |||| || || ||| || || || ||| || ||||| ||||| |||| |||| Sbjct 1205 TTTACGCTGACTTATCTGATGCTACTGCTGCTACAATCAACGAACTTCGACAAGCGTTCC 1264 Query 956 AATTGCAAAAGCTTTATGAAAGAGATGCTCGTGGTGGAACAAGGTACATTGAGATTATCC 1015 || | ||| || | ||| | || || ||||| ||||| | ||||| ||| |||| Sbjct 1265 AAGTACAACGCCTCTTAGAACGTGACGCCCGTGGCGGAACTCGATACATCGAGCTTATAA 1324 Query 1016 GTTCCCATTTCAATGTGCAGTCTCCAGATGCAAGGTTGCAACGTGCAGAGTATCTTGGAG 1075 || || ||| || ||||| || ||| | || ||||| | || || || || | Sbjct 1325 AATCTCACTTCGGCGTCTCTTCTCCTGACGCACGATTACAACGCCCCGAATACCTCGGCG 1384 Query 1076 GTTCTTCAACTCCTGTGAATATTTCTCCGATTCCACAGACTTCCTCAACAGACTCTACAT 1135 | || | || || || ||| | ||| | |||| || | | ||| |||| Sbjct 1385 GCGGCTCTAGCCCGGTAAACATTACCCCGGTAACACAACAATCTGCCTCTGACGCTACTA 1444 Query 1136 CTCCTCAAGGAAATCTTGCTGCTTATGGTACAGCGATTGGATCGAAGCGA-GTTTTCACA 1194 | |||||||| || ||||| | | |||||||| | ||| | | | ||| || Sbjct 1445 CGCCTCAAGGCAACCTTGCAGGCTTCGGTACAGCCACCCT-TCGCGGTCACGGCTTCTCA 1503 Query 1195 AAGTCTTTCACAGAACATGGTGTAATCCTTGGATTAGCCTCTGTACGCGCCGATCTCAAC 1254 || || ||||| ||||| | | ||| |||| | | ||| || || |||||||| | | Sbjct 1504 AAATCCTTCACCGAACACTGCATTATCATTGGCATGGTCTCCGTCCGTGCCGATCTAACC 1563 Query 1255 TATCAGCAAGGTTTGGATAGGATGTGGTCACGAAGAACACGCTGGGACTTTTACTGGCCT 1314 |||||||| || | | | |||| || || |||||||| ||||| ||||||||| Sbjct 1564 TATCAGCAGGGCCTTAACCGCATGTTCTCGCGTTCAACACGCTATGACTTCTACTGGCCT 1623 Query 1315 GCTCTTAGCCATTTAGGTGAGCAAGCTGTGCTCAATAAAGAGATCTATTGTCAAGGTCCT 1374 || || || | || || ||| | | || |||||||| |||| || | | ||| || Sbjct 1624 GCACTCTCTCACCTGGGCGAACAATCCATACTTAATAAAGAAATCTTTTCTGATGGTTCT 1683 Query 1375 TCAGTTAAAAATTCTGGAGGAGAGATTGTGGATGACCAAGTCTTTGGATATCAGGAGAGA 1434 | | || |||| | ||||| || ||||| || | Sbjct 1684 ---------------------GCCACTGACGATGCC---GTCTTCGGCTATCAAGAACGC 1719 Query 1435 TTTGCGGAGTATCGCTATAAGACTTCGAAAATTACCGGCAAGTTCCGATCAAATGCTACA 1494 | |||||| || |||||||| |||| | |||||| ||||| || ||||| || Sbjct 1720 TATGCGGAATACCGCTATAAACCTTCTACTATTACCTCTCTCTTCCGGTCCAATGCGACC 1779 Query 1495 AGTTCTTTAGATTCATGGCATTTAGCTCAGGAATTTGAGAATCTTCCAACACTTTCTCCG 1554 ||| | ||| | ||||| | | || || || | | ||| ||| ||||| ||| Sbjct 1780 GCTTCACTCGATGCTTGGCACCTGTCCCAAGACTTCGCAACTCTACCAGCACTTAATCCT 1839 Query 1555 GAGTTTATCGAAGAAAATCCTCCTATGGATCGTGTTCTTGCTGTAAGTACTGAGCCAGAT 1614 || || ||||| ||||| || || || | || | || || | | || || || Sbjct 1840 TCATTCATTGAAGACAATCCACCAATCGACAGAATTGTCGCCGTTCCTTCGGAACCCGAC 1899 Query 1615 TTTCTTTTAGATGGTTGGTTTTCATTGCGTTGCGCAAGACCAATGCCTGTTTACTCTGTC 1674 ||| | || ||| | ||||| || || | | | || |||||||| ||||| || Sbjct 1900 TTTATCTTCGATTCACACATGTCATTACGATGTGTACGTCCTATGCCTGTGTACTCCGTA 1959 Query 1675 CCAGGCTTCATTGATCATTTCTAA 1698 || ||||| ||||| ||||||||| Sbjct 1960 CCCGGCTTAATTGACCATTTCTAA 1983 >seq9 Length=4117 Score = 84.2 bits (92), Expect = 6e-13 Identities = 265/408 (65%), Gaps = 6/408 (1%) Strand=Plus/Plus Query 103 AAAACTACATTCGACGCCGGTTACCTAATCCCTATCTTTTGCGATGAAGTTCTCCCTGGA 162 |||||||| || |||||||| | ||||||||||||||| ||| |||| || || || Sbjct 2516 AAAACTACTTTTGACGCCGGAAAACTAATCCCTATCTTTGTCGACGAAGCACTTCCCGGC 2575 Query 163 GATACTTTCTCCTTGAAAGAGGCGTTTTTAGCACGTATGGCAACGCCTATCTTTCCTCTT 222 || |||||| | || | | || |||||| | || || ||||| || | Sbjct 2576 GACACTTTCAAACTCAACATGACTGCCTTTGCACGTCTTGCCACACCTATTAACCCCATC 2635 Query 223 ATGGATAATTTGCGTTTAGATACGCAGTATTTCTTTGTTCCTCTTCGACTGTTATGGTCG 282 |||||||| || | || ||||| | |||| ||| || | || || ||||| Sbjct 2636 ATGGATAACATGTACATGGACACGCATTTCTTCTCTGTACCAATGCGTCTACTATGGGAC 2695 Query 283 AATTTCCAAAAGTTCTGTGGAGAACAAGATAATCCTGATGATTCTACAGATTTTCT--TA 340 || | ||||| ||| ||| |||||| | || | ||||| | || | ||| || Sbjct 2696 AACTGGCAAAAATTCAATGGTGAACAAATCGACCCCGGCGATTCCATTGACTATCTAATA 2755 Query 341 CC-CCCATTTTAACCGCTCCTGCTGGGGGATTTACTGAAGGATCGATCCATGATTATCTT 399 || ||| || | || |||||||| || | | ||||| || || ||||| | Sbjct 2756 CCTACCACTT---CTGCACCTGCTGGCGGTTACGCCGAAGGTTCTATGTCCGATTACTTC 2812 Query 400 GGTCTACCTACTAAAGTTGCTGGAGTTCAATGTGTTGCGTTCTGGCACAGAGCTTACAAT 459 || | ||||||||||| ||||| | || ||| | ||||| |||| || || Sbjct 2813 GGCATCCCTACTAAAGTGGCTGGCCTCGAACACTCTGCTATGTGGCATCGAGCCTATAAC 2872 Query 460 TTGATTTGGAACCAGTACTATCGCGACGAAAACATTCAGGAATCTGTT 507 | | |||||| | | | || ||||||||| | || || ||| || Sbjct 2873 CTCGTCTGGAACGAATGGTTCCGAGACGAAAACCTCCAAGACTCTCTT 2920 >seq3 Length=2115 Score = 84.2 bits (92), Expect = 6e-13 Identities = 261/404 (65%), Gaps = 0/404 (0%) Strand=Plus/Plus Query 101 TAAAAACTACATTCGACGCCGGTTACCTAATCCCTATCTTTTGCGATGAAGTTCTCCCTG 160 |||||||||| ||||||||||| | ||||||||||| || ||| || | | | |||| Sbjct 508 TAAAAACTACTTTCGACGCCGGAAAACTAATCCCTATACTTGTCGACGAGGCTTTGCCTG 567 Query 161 GAGATACTTTCTCCTTGAAAGAGGCGTTTTTAGCACGTATGGCAACGCCTATCTTTCCTC 220 |||| || ||| || || | | ||| |||||| | || || ||||| ||| Sbjct 568 GAGACACCTTCAAATTAAACATGACTGCTTTCGCACGTCTTGCCACACCTATAAATCCCA 627 Query 221 TTATGGATAATTTGCGTTTAGATACGCAGTATTTCTTTGTTCCTCTTCGACTGTTATGGT 280 | ||||| ||| || | || ||||| | |||| ||| ||| | || || | ||| Sbjct 628 TCATGGACAATATGTACATGGACACGCACTTCTTCTCTGTCCCTATGCGTCTTCTCTGGG 687 Query 281 CGAATTTCCAAAAGTTCTGTGGAGAACAAGATAATCCTGATGATTCTACAGATTTTCTTA 340 || | ||||| ||| ||||||||| | |||| || || | || | ||| | Sbjct 688 ATAACTGGCAAAAATTCAACGGAGAACAAATCGACCCTGGCGACTCCATTGACTATCTAA 747 Query 341 CCCCCATTTTAACCGCTCCTGCTGGGGGATTTACTGAAGGATCGATCCATGATTATCTTG 400 ||| | | | ||||| ||||| || | | || || || || ||||| | | Sbjct 748 TCCCTACTACCAATGCTCCCGCTGGCGGTTACGCCGAGGGTTCAATGTCCGATTACTTCG 807 Query 401 GTCTACCTACTAAAGTTGCTGGAGTTCAATGTGTTGCGTTCTGGCACAGAGCTTACAATT 460 | | || ||||||||| | | || ||| | ||||| |||| |||||| Sbjct 808 GCATTCCCACTAAAGTTCCCAACTTAGAACACTCTGCTATGTGGCATCGAGCCTACAATC 867 Query 461 TGATTTGGAACCAGTACTATCGCGACGAAAACATTCAGGAATCT 504 | | |||||| | | | || |||||||| |||| || ||| Sbjct 868 TCGTCTGGAACGAATGGTTCCGTGACGAAAATCTTCAAGACTCT 911 Score = 77.0 bits (84), Expect = 9e-11 Identities = 280/434 (65%), Gaps = 12/434 (3%) Strand=Plus/Plus Query 947 AAGCCTTCCAATTGCAAAAGCTTTATGAAAGAGATGCTCGTGGTGGAACAAGGTACATTG 1006 |||| ||||| | ||| ||| ||| | || || ||||| ||||| | || || | Sbjct 1246 AAGCGTTCCAGGTACAACGCCTTCTAGAACGTGACGCCCGTGGCGGAACTCGATATATCG 1305 Query 1007 AGATTATCCGTTCCCATTTCAATGTGCAGTCTCCAGATGCAAGGTTGCAACGTGCAGAGT 1066 || | ||| || || ||| || ||||| || ||| | | ||||| | || | Sbjct 1306 AGCTAATCAAATCTCACTTCGGCGTCTCTTCTCCTGACGCACGACTACAACGCCCCGAAT 1365 Query 1067 ATCTTGGAGGTTCTTCAACTCCTGTGAATATTTCTCCGAT---TCCACAGACTTCCTCAA 1123 | || || || |||||||| || || ||| ||||| | || ||| || |||| Sbjct 1366 ACCTCGGCGGCGGCTCAACTCCGGTAAACATTACTCCGGTAACTCAACAATCTGCCTCT- 1424 Query 1124 CAGACTCTACATCTCCTCAAGGAAATCTTGCTGCTTATGGTACAGCGATTGGATCGAAG- 1182 ||| ||||| | |||||||| || ||||| | | ||||| || | ||| | Sbjct 1425 --GACGCTACAACGCCTCAAGGCAACCTTGCAGGCTTCGGTACGGCCACCCT-TCGCGGT 1481 Query 1183 --CGAGTTTTCACAAAGTCTTTCACAGAACATGGTGTAATCCTTGGATTAGCCTCTGTAC 1240 || |||||| || || || || ||||| | | ||| |||| | | ||| || | Sbjct 1482 CACGGCTTTTCAAAA--TCCTTTACCGAACACTGCATTATCATTGGCATGGTCTCCGTCC 1539 Query 1241 GCGCCGATCTCAACTATCAGCAAGGTTTGGATAGGATGTGGTCACGAAGAACACGCTGGG 1300 | |||||||| | || ||||| || | | | |||| || || || |||| | Sbjct 1540 GTGCCGATCTAACTTACCAGCAGGGCCTAAACCGAATGTTCTCGCGTTCCACGCGCTATG 1599 Query 1301 ACTTTTACTGGCCTGCTCTTAGCCATTTAGGTGAGCAAGCTGTGCTCAATAAAGAGATCT 1360 |||| ||||||||||| || || | || || ||| | | || |||||||| |||| Sbjct 1600 ACTTCTACTGGCCTGCACTCTCTCACCTTGGCGAACAATCCATCCTTAATAAAGAAATCT 1659 Query 1361 ATTGTCAAGGTCCT 1374 || | | ||| || Sbjct 1660 TTTCTGATGGTTCT 1673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14489087951120