Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astrammina_20rara_20[genbank_20GCA_5F000211355.2_202011-04-27] 3,231 sequences; 1,450,095 total letters Query= NC_002643.1 Length=4594 Score E Sequences producing significant alignments: (Bits) Value seq3 118 3e-23 seq9 96.9 1e-16 seq2 89.7 2e-14 >seq3 Length=2115 Score = 118 bits (130), Expect = 3e-23 Identities = 274/406 (67%), Gaps = 8/406 (2%) Strand=Plus/Plus Query 241 TTCTTCTTCGTCCCTTGCCGACTAGTATGGGACAACTGGGAAAAATTCAACGGAGCACAA 300 ||||||| |||||| || || | ||||| |||||| ||||||||||||||| |||| Sbjct 657 TTCTTCTCTGTCCCTATGCGTCTTCTCTGGGATAACTGGCAAAAATTCAACGGAGAACAA 716 Query 301 GACAACCCATCGGACTCAACGGACTATTTGATCCCAACAATCACAGCACCCGCTGGTGGC 360 | |||| ||||| | |||||| | ||||| || | || || |||||||| || Sbjct 717 ATCGACCCTGGCGACTCCATTGACTATCTAATCCCTACTACCAATGCTCCCGCTGGCGGT 776 Query 361 TTCGAAAACATGTCCATCTACGATCACTTCGGAATTCCGACACAAGTTGCAAATCTCGAG 420 | || | || || | |||| ||||||| ||||| || ||||| | || || || Sbjct 777 TACGCCGAGGGTTCAATGTCCGATTACTTCGGCATTCCCACTAAAGTTCCCAA-CT-TAG 834 Query 421 ATAAATGCTCTACCTTTCA--GAGCTTACAATCTTATCTATAACGACTGGTTCCGAGACC 478 | | | ||| | || |||| |||||||| ||| ||||| |||||||| ||| Sbjct 835 AACACTCTGCTATGTGGCATCGAGCCTACAATCTCGTCTGGAACGAATGGTTCCGTGACG 894 Query 479 AAAATCTTATCGGAAAAATCGCCGTTCCTAAAGGAGACGGACCAGACAACCACGCGGACT 538 |||||||| | || | || || || || || || || | | |||| Sbjct 895 AAAATCTTCAAGACTCTCTCACTGTCTCTCGCGGTGATGGGCCTGATCCCTCTACCGACT 954 Query 539 ATCAACTACTCAAAGCC--GCAAAACCGCACGACTACTTCACAAGCGCACTACCTTGGCC 596 ||| || ||| | | | |||| ||||||||||||||| |||||||||||||| Sbjct 955 -TCACCT-TACAACGTCGAGGCAAACGCCACGACTACTTCACATCTGCACTACCTTGGCC 1012 Query 597 ACAAAAAGGCATGGCTGTAGAAATGCCAATCGGCAACTCTGCACCA 642 ||||||||| || || || | || | |||| ||||| ||| Sbjct 1013 TCAAAAAGGCGCAGCCGTTCAACTCCCTCTGGGCACTTCTGCTCCA 1058 >seq9 Length=4117 Score = 96.9 bits (106), Expect = 1e-16 Identities = 210/313 (67%), Gaps = 6/313 (2%) Strand=Plus/Plus Query 1172 TAACCTACCAACAAGGCCTTCACAAAATGTGGTCACGTCAAACAAGATGGGACTTCTTCT 1231 |||| || ||||| |||||| || ||||| || ||| || | | ||||||| || Sbjct 3591 TAACATATCAACAGGGCCTTAACCGAATGTTCTCGCGTTCTACGCGCTATGACTTCTACT 3650 Query 1232 GGCCTAAATTCCAAGAACTCGGTGAACAAGCTATCCTTAACAAAGAAATCTACGCACAAG 1291 ||||| | | | || || |||||| |||| |||||||||||||||| | | | | Sbjct 3651 GGCCTGCACTATCTCACCTTGGCGAACAATCTATTCTTAACAAAGAAATCTTCTCTGATG 3710 Query 1292 GAAATGCTACCGACTCGGAAATCTTCGGCTATCAAGAAAGATACGGTGAATACCGCTTCC 1351 | || |||||| | | ||||||||||||||| | |||| |||||||||| | Sbjct 3711 GTTCAGCCACCGACGATGCCGTATTCGGCTATCAAGAACGCTACGCGGAATACCGCTACA 3770 Query 1352 GTCCATCTGAAATTAAAGGACAATTCCGCTCTAACTTCGCTGAAAGCT---TAGACGTAT 1408 || ||| |||| | || |||||||| || | ||| | || | | Sbjct 3771 AACCTTCTACCATTACCTCCCTGTTTCGCTCTAA---TGCAACAGGCTCACTCGATGCTT 3827 Query 1409 GGCACCTTGCCGAATACTTCACAGTGAAACCATCACTGAACAAAACTTTCATTGAAAGCA 1468 ||||||| || || ||||| || |||| |||| ||| | ||||||||| || Sbjct 3828 GGCACCTGTCCCAAGACTTCGCAACTCTACCAGCACTTAACCCTTCATTCATTGAAGACA 3887 Query 1469 ACACACCAATCGA 1481 || |||||||||| Sbjct 3888 ACCCACCAATCGA 3900 Score = 78.8 bits (86), Expect = 3e-11 Identities = 169/250 (68%), Gaps = 6/250 (2%) Strand=Plus/Plus Query 239 ATTTCTTCTTCGTCCCTTGCCGACTAGTATGGGACAACTGGGAAAAATTCAACGGAGCAC 298 ||||||||| || || || ||| |||||||||||||| |||||||||| || | || Sbjct 2661 ATTTCTTCTCTGTACCAATGCGTCTACTATGGGACAACTGGCAAAAATTCAATGGTGAAC 2720 Query 299 AAGACAACCCATCGGACTCAACGGACTATTTGATCCCAACAATCACAGCACCCGCTGGTG 358 || | |||| || || | |||||| | || || || | | ||||| ||||| | Sbjct 2721 AAATCGACCCCGGCGATTCCATTGACTATCTAATACCTACCACTTCTGCACCTGCTGGCG 2780 Query 359 GCTTCGAAAACATGTCCATCTACGATCACTTCGGAATTCCGACACAAGTTGCAAATCTCG 418 | | || | || || | |||| ||||||| || || || |||| || |||| Sbjct 2781 GTTACGCCGAAGGTTCTATGTCCGATTACTTCGGCATCCCTACTAAAGTGGCTGGCCTCG 2840 Query 419 AGATAAATGCT-CTACCTTTCA--GAGCTTACAATCTTATCTATAACGACTGGTTCCGAG 475 | | | || ||| | || |||| || || || ||| ||||| |||||||||| Sbjct 2841 A---ACACTCTGCTATGTGGCATCGAGCCTATAACCTCGTCTGGAACGAATGGTTCCGAG 2897 Query 476 ACCAAAATCT 485 || |||| || Sbjct 2898 ACGAAAACCT 2907 >seq2 Length=2125 Score = 89.7 bits (98), Expect = 2e-14 Identities = 165/242 (68%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 1107 CGGATTCTCAAAATCGTTCGTAGAACACGGATATGTCCTAGGCTTCATCAGAGCCCGTGG 1166 ||| ||||||||||| ||| |||||| | | || | ||| | || | ||||| Sbjct 1494 CGGCTTCTCAAAATCCTTCACCGAACACTGCATTATCATTGGCATGGTCTCCGTCCGTGC 1553 Query 1167 ACAAGTAACCTACCAACAAGGCCTTCACAAAATGTGGTCACGTCAAACAAGATGGGACTT 1226 | ||||||| || || |||||| || |||| || ||| |||| | | ||||| Sbjct 1554 CGATCTAACCTATCAGCAGGGCCTTAACCGCATGTTCTCGCGTTCAACACGCTATGACTT 1613 Query 1227 CTTCTGGCCTAAATTCCAAGAACTCGGTGAACAAGCTATCCTTAACAAAGAAATCTACGC 1286 || ||||||| | || | || || |||||| | || ||||| |||||||||| | Sbjct 1614 CTACTGGCCTGCACTCTCTCACCTGGGCGAACAATCCATACTTAATAAAGAAATCTTTTC 1673 Query 1287 ACAAGGAAATGCTACCGACTCGGAAATCTTCGGCTATCAAGAAAGATACGGTGAATACCG 1346 | || ||| || ||| | ||||||||||||||||| | || | |||||||| Sbjct 1674 TGATGGTTCTGCCACTGACGATGCCGTCTTCGGCTATCAAGAACGCTATGCGGAATACCG 1733 Query 1347 CT 1348 || Sbjct 1734 CT 1735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14588284445485