Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astrammina_20rara_20[genbank_20GCA_5F000211355.2_202011-04-27] 3,231 sequences; 1,450,095 total letters Query= NC_007461.1 Length=4530 Score E Sequences producing significant alignments: (Bits) Value seq2 116 1e-22 seq3 86.0 2e-13 >seq2 Length=2125 Score = 116 bits (128), Expect = 1e-22 Identities = 482/766 (63%), Gaps = 32/766 (4%) Strand=Plus/Plus Query 901 CTTCGTGAAGCTTTCCAATTGCAAAAGCTTTATGAGAGAGATGCCCGTGGTGGAACAAGG 960 ||||| |||| |||||| | ||| || | || | || |||||||| ||||| | Sbjct 1249 CTTCGACAAGCGTTCCAAGTACAACGCCTCTTAGAACGTGACGCCCGTGGCGGAACTCGA 1308 Query 961 TACATTGAGATTATTCGTTCCCATTTCAATGTGCAGTCTCCAGATGCAAGGTTGCAACGT 1020 ||||| ||| |||| || || ||| || ||||| || ||| | || ||||| Sbjct 1309 TACATCGAGCTTATAAAATCTCACTTCGGCGTCTCTTCTCCTGACGCACGATTACAACGC 1368 Query 1021 GCAGAGTATCTTGGAGGTTCTTCAACTCCTGTGAATATTTCTCCGATTCCACAGACTTCC 1080 | || || || || || || | || || || ||| | ||| | |||| || Sbjct 1369 CCCGAATACCTCGGCGGCGGCTCTAGCCCGGTAAACATTACCCCGGTAACACAACAATCT 1428 Query 1081 TCAACAGACTCCACATCTCCTCAAGGAAATCTTGCTGCTTATGGTACAGCGATTGGATCG 1140 | | ||| | || | |||||||| || ||||| | | |||||||| | ||| Sbjct 1429 GCCTCTGACGCTACTACGCCTCAAGGCAACCTTGCAGGCTTCGGTACAGCCACCCT-TCG 1487 Query 1141 AAGCGA-GTCTTCACAAAGTCCTTCACAGAACATGGTGTAATCCTTGGATTAGCCTCTGT 1199 | | | |||| |||| |||||||| ||||| | | ||| |||| | | ||| || Sbjct 1488 CGGTCACGGCTTCTCAAAATCCTTCACCGAACACTGCATTATCATTGGCATGGTCTCCGT 1547 Query 1200 ACGCGCCGATCTCAACTATCAGCAAGGTTTGGATAGGATGTGGTCACGAAGAACGCGCTG 1259 || |||||||| | ||||||||| || | | | |||| || || ||| |||| Sbjct 1548 CCGTGCCGATCTAACCTATCAGCAGGGCCTTAACCGCATGTTCTCGCGTTCAACACGCTA 1607 Query 1260 GGACTTTTACTGGCCTGCTCTTAGCCATTTAGGTGAGCAAGCTGTGCTCAATAAAGAGAT 1319 ||||| ||||||||||| || || | || || ||| | | || |||||||| || Sbjct 1608 TGACTTCTACTGGCCTGCACTCTCTCACCTGGGCGAACAATCCATACTTAATAAAGAAAT 1667 Query 1320 CTATTGCCAAGGTCCTGCAGTTAAGGATGCTCAGAATGGCAATGTTGTTGTGGATGAGCA 1379 || || | ||| |||| | | ||||| Sbjct 1668 CTTTTCTGATGGTTCTGCCACTGACGATGC------------------------------ 1697 Query 1380 AGTCTTTGGATATCAGGAGAGATTTGCGGAGTATCGCTATAAGACTTCGAAAATTACTGG 1439 ||||| || ||||| || | | |||||| || |||||||| |||| | ||||| Sbjct 1698 CGTCTTCGGCTATCAAGAACGCTATGCGGAATACCGCTATAAACCTTCTACTATTACCTC 1757 Query 1440 CAAGTTCCGATCAAATGCTACAAGTTCTTTAGATTCATGGCATTTAGCTCAGGAATTTGA 1499 ||||| || ||||| || ||| | ||| | ||||| | | || || || | Sbjct 1758 TCTCTTCCGGTCCAATGCGACCGCTTCACTCGATGCTTGGCACCTGTCCCAAGACTTCGC 1817 Query 1500 GAATCTTCCAACACTTTCTCCGGAGTTTATCGAAGAAAATCCTCCTATGGATCGTGTTCT 1559 | ||| ||| ||||| ||| || || ||||| ||||| || || || | || | Sbjct 1818 AACTCTACCAGCACTTAATCCTTCATTCATTGAAGACAATCCACCAATCGACAGAATTGT 1877 Query 1560 TGCTGTAAATACTGAGCCAGATTTTCTTTTAGATGGCTGGTTTTCATTGCGTTGTGCAAG 1619 || || | | || || || ||| | || ||| | ||||| || |||| | | Sbjct 1878 CGCCGTTCCTTCGGAACCCGACTTTATCTTCGATTCACACATGTCATTACGATGTGTACG 1937 Query 1620 ACCAATGCCTGTCTACTCTGTTCCAGGCCTCATTGATCATTTCTAA 1665 || |||||||| ||||| || || ||| | ||||| ||||||||| Sbjct 1938 TCCTATGCCTGTGTACTCCGTACCCGGCTTAATTGACCATTTCTAA 1983 >seq3 Length=2115 Score = 86.0 bits (94), Expect = 2e-13 Identities = 263/406 (65%), Gaps = 3/406 (1%) Strand=Plus/Plus Query 101 TAAAAACTACATTCGACGCCGGTTACCTAATCCCTATCTTTTGTGATGAAGTTCTCCCTG 160 |||||||||| ||||||||||| | ||||||||||| || || || | | | |||| Sbjct 508 TAAAAACTACTTTCGACGCCGGAAAACTAATCCCTATACTTGTCGACGAGGCTTTGCCTG 567 Query 161 GAGATACTTTCTCCTTGAAAGAGGCGTTTTTAGCACGTATGGCAACGCCTATCTTTCCTC 220 |||| || ||| || || | | ||| |||||| | || || ||||| ||| Sbjct 568 GAGACACCTTCAAATTAAACATGACTGCTTTCGCACGTCTTGCCACACCTATAAATCCCA 627 Query 221 TTATGGATAATTTGCGTTTAGATACGCAGTATTTCTTTGTTCCTCTTCGACTATTATGGT 280 | ||||| ||| || | || ||||| | |||| ||| ||| | || || | ||| Sbjct 628 TCATGGACAATATGTACATGGACACGCACTTCTTCTCTGTCCCTATGCGTCTTCTCTGGG 687 Query 281 CGAATTTTCAAAAGTTCTGTGGAGAACAAGATGATCCTGGAGATTCTACAGATTTTCTTA 340 || | ||||| ||| ||||||||| || ||||| || || | || | ||| | Sbjct 688 ATAACTGGCAAAAATTCAACGGAGAACAAATCGACCCTGGCGACTCCATTGACTATCTAA 747 Query 341 CCCCAATTTTGACCGCTCCTCAGAATGGTGGTTTTGCTGAAGGATCGATCCATGATTATC 400 ||| | | ||| | ||| ||| |||| || || || || || ||||| Sbjct 748 TCCCTACT---ACCAATGCTCCCGCTGGCGGTTACGCCGAGGGTTCAATGTCCGATTACT 804 Query 401 TTGGTCTACCTACTAAAGTTGCAGGAGTTCAATGTGTTGCGTTTTGGCACAGAGCTTACA 460 | || | || ||||||||| | | || ||| | ||||| |||| |||| Sbjct 805 TCGGCATTCCCACTAAAGTTCCCAACTTAGAACACTCTGCTATGTGGCATCGAGCCTACA 864 Query 461 ATTTGATTTGGAACCAGTACTATCGTGATGAAAATATTCAGGATTC 506 || | | |||||| | | | ||||| |||||| |||| || || Sbjct 865 ATCTCGTCTGGAACGAATGGTTCCGTGACGAAAATCTTCAAGACTC 910 Score = 78.8 bits (86), Expect = 3e-11 Identities = 253/389 (65%), Gaps = 8/389 (2%) Strand=Plus/Plus Query 940 GATGCCCGTGGTGGAACAAGGTACATTGAGATTATTCGTTCCCATTTCAATGTGCAGTCT 999 || |||||||| ||||| | || || ||| | || || || ||| || ||| Sbjct 1278 GACGCCCGTGGCGGAACTCGATATATCGAGCTAATCAAATCTCACTTCGGCGTCTCTTCT 1337 Query 1000 CCAGATGCAAGGTTGCAACGTGCAGAGTATCTTGGAGGTTCTTCAACTCCTGTGAATATT 1059 || || ||| | | ||||| | || || || || || |||||||| || || ||| Sbjct 1338 CCTGACGCACGACTACAACGCCCCGAATACCTCGGCGGCGGCTCAACTCCGGTAAACATT 1397 Query 1060 TCTCCGAT---TCCACAGACTTCCTCAACAGACTCCACATCTCCTCAAGGAAATCTTGCT 1116 ||||| | || ||| || |||| ||| | ||| | |||||||| || ||||| Sbjct 1398 ACTCCGGTAACTCAACAATCTGCCTCT---GACGCTACAACGCCTCAAGGCAACCTTGCA 1454 Query 1117 GCTTATGGTACAGCGATTGGATCGAAGCGA-GTCTTCACAAAGTCCTTCACAGAACATGG 1175 | | ||||| || | ||| | | | ||| |||| ||||| || ||||| | Sbjct 1455 GGCTTCGGTACGGCCACCCT-TCGCGGTCACGGCTTTTCAAAATCCTTTACCGAACACTG 1513 Query 1176 TGTAATCCTTGGATTAGCCTCTGTACGCGCCGATCTCAACTATCAGCAAGGTTTGGATAG 1235 | ||| |||| | | ||| || || |||||||| | || ||||| || | | | Sbjct 1514 CATTATCATTGGCATGGTCTCCGTCCGTGCCGATCTAACTTACCAGCAGGGCCTAAACCG 1573 Query 1236 GATGTGGTCACGAAGAACGCGCTGGGACTTTTACTGGCCTGCTCTTAGCCATTTAGGTGA 1295 |||| || || ||||||| ||||| ||||||||||| || || | || || Sbjct 1574 AATGTTCTCGCGTTCCACGCGCTATGACTTCTACTGGCCTGCACTCTCTCACCTTGGCGA 1633 Query 1296 GCAAGCTGTGCTCAATAAAGAGATCTATT 1324 ||| | | || |||||||| |||| || Sbjct 1634 ACAATCCATCCTTAATAAAGAAATCTTTT 1662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14383491682925