Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astrammina_20rara_20[genbank_20GCA_5F000211355.2_202011-04-27] 3,231 sequences; 1,450,095 total letters Query= NC_022790.1 Length=4129 Score E Sequences producing significant alignments: (Bits) Value seq3 111 4e-21 seq9 109 1e-20 seq2 93.3 1e-15 >seq3 Length=2115 Score = 111 bits (122), Expect = 4e-21 Identities = 346/530 (65%), Gaps = 12/530 (2%) Strand=Plus/Plus Query 841 TATGCAGATCTATCTGAAGCTACATCAGCAACTATTAATCAACTTCGATTAGCATTTGCA 900 ||||| || || ||||| ||||| | ||||| ||||| |||| || ||| || Sbjct 1197 TATGCTGACCTCTCTGACGCTACTGCGGCAACAATTAACGAACTAAGACAAGCGTTCCAG 1256 Query 901 ACACAAAAATTTCTTGAAATACAAGCTCGAGGCGGTTCAAGATATATCGAAGTAATAAAA 960 |||| |||| ||| | || || ||||| | |||||||||| |||| ||| Sbjct 1257 GTACAACGCCTTCTAGAACGTGACGCCCGTGGCGGAACTCGATATATCGAGCTAATCAAA 1316 Query 961 AATCATTTTAACGTAACTAGCCCAGATGCTAGATTACAACGACCAGAATATCTTGGTGGC 1020 ||| || ||| || || || || || ||||||| || ||||| || || ||| Sbjct 1317 TCTCACTTCGGCGTCTCTTCTCCTGACGCACGACTACAACGCCCCGAATACCTCGGCGGC 1376 Query 1021 GGAAGCTCA---CCGGTAAATATCAGTCCGGTCGCACAAACATCGTCAACTGATGCAACA 1077 || |||| |||||||| || | |||||| | ||| ||| | |||| || ||| Sbjct 1377 GG---CTCAACTCCGGTAAACATTACTCCGGTAACTCAACAATCTGCCTCTGACGCTACA 1433 Query 1078 ACACCGCAAGGTAACTTATCGGCCATAGGTACAACGGTACTTAGTGGCCACTCTTTTACA 1137 || || ||||| ||| | | | | | ||||| | ||| | || ||| ||| || Sbjct 1434 ACGCCTCAAGGCAACCTTGCAGGCTTCGGTACGGCCACCCTTCGCGGTCACGGCTTTTCA 1493 Query 1138 AAGAGTTTCACTGAACA-TACAATAGTAATAGGTATGGTATCTGTAAGAACAGATTTAAC 1196 || || || ||||| | || || | || || ||||| || || | | ||| |||| Sbjct 1494 AAATCCTTTACCGAACACTGCATTA-TCATTGGCATGGTCTCCGTCCGTGCCGATCTAAC 1552 Query 1197 ATACCAACAAGGACTGAACAGAATGTTTAGTAGAGAAACAATATACGATTACTACTGGCC 1256 ||||| || || || ||| ||||||| | || || || | ||||||||| Sbjct 1553 TTACCAGCAGGGCCTAAACCGAATGTTCTCGCGTTCCACGCGCTATGACTTCTACTGGCC 1612 Query 1257 A--ACCCTTTCAACGATTGGCGAACAAGCAGTCAAAAACAAAGAAATATACGCACAAGGA 1314 || || ||| | ||||||||||| | || || |||||||| | | | || Sbjct 1613 TGCACTCTCTCACC--TTGGCGAACAATCCATCCTTAATAAAGAAATCTTTTCTGATGGT 1670 Query 1315 AGTGCAGCCGACGAAACTACGTTCGGCTATCAAGAGCGTTATGCGGAATA 1364 | | ||||| | |||||||||||||| |||||||||||||| Sbjct 1671 TCTACCAATGACGATGCCGTCTTCGGCTATCAAGAACGTTATGCGGAATA 1720 Score = 84.2 bits (92), Expect = 6e-13 Identities = 183/270 (68%), Gaps = 3/270 (1%) Strand=Plus/Plus Query 61 TTTAGCGAAGTACCACATGCCGATATACAACGTTCAACATTTGATAGGAGTCATGGGCTA 120 || ||| || ||||| | || ||||||||||| || | || || | ||| || || Sbjct 450 TTCAGCCAAATACCAAAAGCTGATATACAACGGTCGTCCTTCGACCGCTCTCACGGCGTA 509 Query 121 AAAACCACATTTAATGCCGGTCAATTAGTACCAATATATGTAGACGAAGCATTGCCCGGA 180 ||||| || || | ||||| || || | || ||| ||| ||||| || ||||| ||| Sbjct 510 AAAACTACTTTCGACGCCGGAAAACTAATCCCTATACTTGTCGACGAGGCTTTGCCTGGA 569 Query 181 GATACATTTTCATGTAATCTCACTGCATTTAGCA-GATTAGCAACACCAATTCATCCAAC 239 || || || || || | ||||| ||| ||| | | || ||||| || |||| | Sbjct 570 GACACCTTCAAATTAAACATGACTGC-TTTCGCACGTCTTGCCACACCTATAAATCCCAT 628 Query 240 CATGGATAACGCATTCATGGATACCCATTTCTTCGCAGTACCAGTACGACTCGTCTGGGA 299 |||||| || | |||||| || || |||||| | || || | || || ||||||| Sbjct 629 CATGGACAATATGTACATGGACACGCACTTCTTCTCTGTCCCTATGCGTCTTCTCTGGGA 688 Query 300 CGATTTCGAAGAATTTATGGGAGAAACAAA 329 | | || |||| | |||| |||||| Sbjct 689 TAACTGGCAAAAATTCAACGGAG-AACAAA 717 >seq9 Length=4117 Score = 109 bits (120), Expect = 1e-20 Identities = 349/539 (65%), Gaps = 12/539 (2%) Strand=Plus/Plus Query 844 GCAGATCTATCTGAAGCTACATCAGCAACTATTAATCAACTTCGATTAGCATTTGCAACA 903 || ||||||||| ||||||| | ||||| ||||| ||||||| || ||| | | Sbjct 3242 GCTGATCTATCTAAAGCTACTGCCGCAACAATTAACGAACTTCGCCAGGCGTTTCAAGTA 3301 Query 904 CAAAAATTTCTTGAAATACAAGCTCGAGGCGGTTCAAGATATATCGAAGTAATAAAAAAT 963 ||| || | ||| | || || ||||| | ||||||||||| |||||||| Sbjct 3302 CAACGCCTTTTAGAACGTGACGCCCGCGGCGGCACTCGATATATCGAACTAATAAAATCA 3361 Query 964 CATTTTAACGTAACTAGCCCAGATGCTAGATTACAACGACCAGAATATCTTGGTGGCGGA 1023 || || ||| || ||| || || || ||||||| || ||||| || || |||| Sbjct 3362 CACTTCGGCGTCTCTTCCCCTGACGCACGACTACAACGCCCCGAATACCTCGGCGGCG-- 3419 Query 1024 AGCTCA---CCGGTAAATATCAGTCCGGTCGCACAAACATCGTCAACTGATGCAACAACA 1080 ||||| ||||||| || | || || | || ||| | | ||||| || || Sbjct 3420 -GCTCAACTGCGGTAAACATTACCCCAGTAACTCAGCAATCTGCTTCAGATGCTACTACC 3478 Query 1081 CCGCAAGGTAACTTATCGGCCATAGGTA---CAACGGTACTTAGTGGCCACTCTTTTACA 1137 || || |||||| | | || | |||| | | ||| || | ||| || || Sbjct 3479 CCTCAGGGTAACCTTGCAGCTTTCGGTACTGCTAGCCTACATAAT---CACGGCTTCTCA 3535 Query 1138 AAGAGTTTCACTGAACATACAATAGTAATAGGTATGGTATCTGTAAGAACAGATTTAACA 1197 || |||||| ||||| || | || || ||||| ||||| | | ||| ||||| Sbjct 3536 AAATCTTTCACCGAACACTGCATCATCATCGGCATGGTTTCTGTCCGTGCCGATCTAACA 3595 Query 1198 TACCAACAAGGACTGAACAGAATGTTTAGTAGAGAAACAATATACGATTACTACTGGCCA 1257 || ||||| || || ||| ||||||| | || || || | ||||||||| Sbjct 3596 TATCAACAGGGCCTTAACCGAATGTTCTCGCGTTCTACGCGCTATGACTTCTACTGGCCT 3655 Query 1258 ACCCTTTCAACGATTGGCGAACAAGCAGTCAAAAACAAAGAAATATACGCACAAGGAAGT 1317 | || || ||||||||||| | | ||||||||||| | | | | || Sbjct 3656 GCACTATCTCACCTTGGCGAACAATCTATTCTTAACAAAGAAATCTTCTCTGATGGTTCA 3715 Query 1318 GCAGCCGACGAAACTACGTTCGGCTATCAAGAGCGTTATGCGGAATATAGATACAAGCC 1376 || ||||||| | |||||||||||||| || || |||||||| | ||||| || Sbjct 3716 GCCACCGACGATGCCGTATTCGGCTATCAAGAACGCTACGCGGAATACCGCTACAAACC 3774 Score = 104 bits (114), Expect = 6e-19 Identities = 321/497 (65%), Gaps = 41/497 (8%) Strand=Plus/Plus Query 61 TTTAGCGAAGTACCACATGCCGATATACAACGTTCAACATTTGATAGGAGTCATGGGCTA 120 || ||| || ||||| | || ||||||||||| || | || ||| | || || | Sbjct 2456 TTCAGCCAAATACCAAAAGCTGATATACAACGATCGTCTTTCGATCGCTCACACGGAGTC 2515 Query 121 AAAACCACATTTAATGCCGGTCAATTAGTACCAATATATGTAGACGAAGCATTGCCCGGA 180 ||||| || ||| | ||||| || || | || || | ||| ||||||||| | ||||| Sbjct 2516 AAAACTACTTTTGACGCCGGAAAACTAATCCCTATCTTTGTCGACGAAGCACTTCCCGGC 2575 Query 181 GATACATTTTCATGTAATCTCACTGCATTTAGCA-GATTAGCAACACCAATTCATCCAAC 239 || || || | || | ||||| ||| ||| | | || ||||| ||| | || | Sbjct 2576 GACACTTTCAAACTCAACATGACTGCCTTT-GCACGTCTTGCCACACCTATTAACCCCAT 2634 Query 240 CATGGATAACGCATTCATGGATACCCATTTCTTCGCAGTACCAGTACGACTCGTCTGGGA 299 |||||||||| | |||||| || ||||||||| | |||||| | || || | ||||| Sbjct 2635 CATGGATAACATGTACATGGACACGCATTTCTTCTCTGTACCAATGCGTCTACTATGGGA 2694 Query 300 CGATTTCGAAGAATTTATGGGAGAAACAAAAACATATAAGGCAGCTGGTTCCGATAGATT 359 | | | || |||| | || | ||||| || | | || | |||| ||| Sbjct 2695 CAACTGGCAAAAATTCAATGGTG-AACAA----ATCGACCCCGGC-GATTCC-----ATT 2743 Query 360 AGACGGAACACCCGACTTTTCAGTCGCAGCGCCAGTACCACCAACAATTACCGCTTCTGG 419 |||| | || ||| || | | | || ||| Sbjct 2744 -------------GACTAT---------------CTAATACCTACCACTTCTGCACCTGC 2775 Query 420 AAGCGGAGAAGCAGAAGCATCCCTTTCCGATTATTTCGGAATACCAACAAAAGTAGGAGG 479 |||| | || |||| || | |||||||| ||||| || || || ||||| | || Sbjct 2776 TGGCGGTTACGCCGAAGGTTCTATGTCCGATTACTTCGGCATCCCTACTAAAGTGGCTGG 2835 Query 480 ATTAGAATTCAGTGCTCTATGGCACCGAGCATATACGCTCGTTTGGAACGACTGGTTCCG 539 | ||| | |||| | ||||| ||||| |||| ||||| |||||||| |||||||| Sbjct 2836 CCTCGAACACTCTGCTATGTGGCATCGAGCCTATAACCTCGTCTGGAACGAATGGTTCCG 2895 Query 540 AGATGAAAACCTCCAAG 556 ||| ||||||||||||| Sbjct 2896 AGACGAAAACCTCCAAG 2912 >seq2 Length=2125 Score = 93.3 bits (102), Expect = 1e-15 Identities = 336/520 (65%), Gaps = 12/520 (2%) Strand=Plus/Plus Query 851 TATCTGAAGCTACATCAGCAACTATTAATCAACTTCGATTAGCATTTGCAACACAAAAAT 910 ||||||| ||||| | || || || || |||||||| ||| || | |||| Sbjct 1217 TATCTGATGCTACTGCTGCTACAATCAACGAACTTCGACAAGCGTTCCAAGTACAACGCC 1276 Query 911 TTCTTGAAATACAAGCTCGAGGCGGTTCAAGATATATCGAAGTAATAAAAAATCATTTTA 970 | | ||| | || || ||||| | |||| ||||| | |||||| ||| || Sbjct 1277 TCTTAGAACGTGACGCCCGTGGCGGAACTCGATACATCGAGCTTATAAAATCTCACTTCG 1336 Query 971 ACGTAACTAGCCCAGATGCTAGATTACAACGACCAGAATATCTTGGTGGCGGA---AGCT 1027 ||| || || || || |||||||||| || ||||| || || ||||| ||| Sbjct 1337 GCGTCTCTTCTCCTGACGCACGATTACAACGCCCCGAATACCTCGGCGGCGGCTCTAGC- 1395 Query 1028 CACCGGTAAATATCAGTCCGGTCGCACAAACATCGTCAACTGATGCAACAACACCGCAAG 1087 |||||||| || | ||||| ||||| ||| | |||| || || || || |||| Sbjct 1396 --CCGGTAAACATTACCCCGGTAACACAACAATCTGCCTCTGACGCTACTACGCCTCAAG 1453 Query 1088 GTAACTTATCGGCCATAGGTACAACGGTACTTAGTGGCCACTCTTTTACAAAGAGTTTCA 1147 | ||| | | | | | |||||| | ||| | || ||| || |||| |||| Sbjct 1454 GCAACCTTGCAGGCTTCGGTACAGCCACCCTTCGCGGTCACGGCTTCTCAAAATCCTTCA 1513 Query 1148 CTGAACA-TACAATAGTAATAGGTATGGTATCTGTAAGAACAGATTTAACATACCAACAA 1206 | ||||| | || || | || || ||||| || || | | ||| |||| || || || Sbjct 1514 CCGAACACTGCATTA-TCATTGGCATGGTCTCCGTCCGTGCCGATCTAACCTATCAGCAG 1572 Query 1207 GGACTGAACAGAATGTTTAGTAGAGAAACAATATACGATTACTACTGGCCA--ACCCTTT 1264 || || ||| | ||||| | |||| || || | ||||||||| || || | Sbjct 1573 GGCCTTAACCGCATGTTCTCGCGTTCAACACGCTATGACTTCTACTGGCCTGCACTCTCT 1632 Query 1265 CAACGATTGGCGAACAAGCAGTCAAAAACAAAGAAATATACGCACAAGGAAGTGCAGCCG 1324 || | | ||||||||| | | || |||||||| | | | || ||| | | Sbjct 1633 CACC--TGGGCGAACAATCCATACTTAATAAAGAAATCTTTTCTGATGGTTCTGCCACTG 1690 Query 1325 ACGAAACTACGTTCGGCTATCAAGAGCGTTATGCGGAATA 1364 |||| | |||||||||||||| || ||||||||||| Sbjct 1691 ACGATGCCGTCTTCGGCTATCAAGAACGCTATGCGGAATA 1730 Score = 89.7 bits (98), Expect = 1e-14 Identities = 184/270 (68%), Gaps = 3/270 (1%) Strand=Plus/Plus Query 61 TTTAGCGAAGTACCACATGCCGATATACAACGTTCAACATTTGATAGGAGTCATGGGCTA 120 || ||| || |||| || ||||||||||| || | || ||| | ||| || | Sbjct 451 TTCAGCCAAATACCCAGGGCTGATATACAACGATCGTCTTTCGATCGCTCTCACGGCGTG 510 Query 121 AAAACCACATTTAATGCCGGTCAATTAGTACCAATATATGTAGACGAAGCATTGCCCGGA 180 ||||| || || | ||||| || || | || ||| ||| ||||| || | |||||| Sbjct 511 AAAACAACTTTCGACGCCGGAAAACTAATCCCTATACTTGTCGACGAGGCTCTTCCCGGA 570 Query 181 GATACATTTTCATGTAATCTCACTGCATTTAGCA-GATTAGCAACACCAATTCATCCAAC 239 || || || | || | ||||| ||| ||| | | || ||||| || |||| | Sbjct 571 GACACCTTCAAACTAAACATGACTGC-TTTCGCACGTCTTGCCACACCCATAAATCCCAT 629 Query 240 CATGGATAACGCATTCATGGATACCCATTTCTTCGCAGTACCAGTACGACTCGTCTGGGA 299 |||||| ||| | |||||| || ||||||||| | |||||| | || || ||||||| Sbjct 630 CATGGACAACATGTACATGGACACGCATTTCTTCTCTGTACCAATGCGTCTACTCTGGGA 689 Query 300 CGATTTCGAAGAATTTATGGGAGAAACAAA 329 | | | || |||| | |||| |||||| Sbjct 690 CAACTGGCAAAAATTCAACGGAG-AACAAA 718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 13100337030010