Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astrammina_20rara_20[genbank_20GCA_5F000211355.2_202011-04-27] 3,231 sequences; 1,450,095 total letters Query= NC_027636.1 Length=4501 Score E Sequences producing significant alignments: (Bits) Value seq9 98.7 3e-17 seq3 96.9 1e-16 seq2 87.8 5e-14 >seq9 Length=4117 Score = 98.7 bits (108), Expect = 3e-17 Identities = 364/559 (65%), Gaps = 25/559 (4%) Strand=Plus/Plus Query 827 TTGCCCAATGTCTATGCTGATCTTTCCCAGGCTACCGCTGCAACAATTAATCAGCTCCGG 886 || || ||| || | |||||||| || | ||||| || ||||||||||| | || || Sbjct 3227 TTCCCTAATATCCAAGCTGATCTATCTAAAGCTACTGCCGCAACAATTAACGAACTTCGC 3286 Query 887 CAGTCGTTTCAGATACAGAAGCTTTTAGAAAGGGATGCTCGTGGTGGAACACGATATACA 946 ||| ||||||| |||| ||||||||| | || || || || || || ||||||| Sbjct 3287 CAGGCGTTTCAAGTACAACGCCTTTTAGAACGTGACGCCCGCGGCGGCACTCGATATATC 3346 Query 947 GAGATTGTGCGATCTCACTTCGGCGTTATCAGCCCGGATGCTCGCTTGCAACGACCCGAG 1006 || | | ||| ||||||||||| ||| || || || | ||||| ||||| Sbjct 3347 GAACTAATAAAATCACACTTCGGCGTCTCTTCCCCTGACGCACGACTACAACGCCCCGAA 3406 Query 1007 TACCTTGGCGGCG---CGAGTACGCCTATCGCAGTCAATCCAATTGCTCAGACGTCAGGC 1063 ||||| ||||||| | | | || | | | | ||| | ||||| || | Sbjct 3407 TACCTCGGCGGCGGCTCAACTGCGGTAAAC---ATTACCCCAGTAACTCAGCAATCTG-- 3461 Query 1064 ACTTCAGCAAGCGGTACGACCACGCCGCTGGGAACCTTGTCTGCGATGGGAACAGCT--- 1120 |||||| | || ||| ||| | | | || ||||||| | || | || || ||| Sbjct 3462 -CTTCAG-ATGC--TACTACCCCTCAG--GGTAACCTTG-CAGCTTTCGGTACTGCTAGC 3514 Query 1121 TTGCATCAGGGCAGCGGTTTTACTCAGTCCTTCACAGAACACGGGTACGTTATTGGGCTC 1180 | ||| | || ||| || | | || ||||| |||||| | | | || || | Sbjct 3515 CTACATAA--TCA-CGGCTTCTCAAAATCTTTCACCGAACACTGCATCATCATCGGCATG 3571 Query 1181 GTTGCTGTCCGGGCGGATTTGACCTATCAGCAGGGTCTT--CGGAAGCTTTGGTCTCGTT 1238 ||| ||||||| || ||| | || ||||| ||||| ||| | ||| | | || |||| Sbjct 3572 GTTTCTGTCCGTGCCGATCTAACATATCAACAGGGCCTTAACCGAA--TGTTCTCGCGTT 3629 Query 1239 CTACCCGTTATGATTACTATTTTCCTGCGTTCGCGATGCTCGGTGAGCAAGCTGTTTTGA 1298 |||| || ||||| | ||| | ||||| | | || || || ||| || || | | Sbjct 3630 CTACGCGCTATGACTTCTACTGGCCTGCACTATCTCACCTTGGCGAACAATCTATTCTTA 3689 Query 1299 ACAAGGAGATTTATTGTGATGGGTCTGCCAATGACCCTCTTGTTTTTGGGTATCAGGAGC 1358 |||| || || | | |||||| || |||| ||| | || || || ||||| || | Sbjct 3690 ACAAAGAAATCTTCTCTGATGGTTCAGCCACCGACGATGCCGTATTCGGCTATCAAGAAC 3749 Query 1359 GTTGGGCTGAGTATCGTTA 1377 | | || || || || || Sbjct 3750 GCTACGCGGAATACCGCTA 3768 Score = 86.0 bits (94), Expect = 2e-13 Identities = 147/211 (70%), Gaps = 3/211 (1%) Strand=Plus/Plus Query 46 CCCAAAGCGGATATTCCGCGTTCGTCGTTTGATAATTCAGACT-ACTCACAAGACTACGT 104 || ||||| ||||| | || ||||| || ||| ||| || | ||| || |||| | Sbjct 2468 CCAAAAGCTGATATACAACGATCGTCTTTCGATCGCTCACACGGAGTCAAAA--CTACTT 2525 Query 105 TTGACGCCGGTTATTTGATTCCTATTTATGTTGATGAGATTCTTCCCGGCGATACTTTTA 164 |||||||||| | | || ||||| | ||| || || ||||||||||| ||||| | Sbjct 2526 TTGACGCCGGAAAACTAATCCCTATCTTTGTCGACGAAGCACTTCCCGGCGACACTTTCA 2585 Query 165 ATTTGCAGATGACTGCGTTTGCGCGTATGGCGACTCCGTTGTTTCCGTTGATGGATAATT 224 | | | |||||||| ||||| ||| | || || || | || | |||||||| Sbjct 2586 AACTCAACATGACTGCCTTTGCACGTCTTGCCACACCTATTAACCCCATCATGGATAACA 2645 Query 225 TGTACATGGATTCGttttttttCTTTGTTCC 255 |||||||||| || ||| |||| ||| || Sbjct 2646 TGTACATGGACACGCATTTCTTCTCTGTACC 2676 >seq3 Length=2115 Score = 96.9 bits (106), Expect = 1e-16 Identities = 132/182 (73%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 839 TATGCTGATCTTTCCCAGGCTACCGCTGCAACAATTAATCAGCTCCGGCAGTCGTTTCAG 898 |||||||| || || | ||||| || ||||||||||| | || | || |||| ||| Sbjct 1197 TATGCTGACCTCTCTGACGCTACTGCGGCAACAATTAACGAACTAAGACAAGCGTTCCAG 1256 Query 899 ATACAGAAGCTTTTAGAAAGGGATGCTCGTGGTGGAACACGATATACAGAGATTGTGCGA 958 |||| ||| ||||| | || || ||||| ||||| ||||||| ||| | | | Sbjct 1257 GTACAACGCCTTCTAGAACGTGACGCCCGTGGCGGAACTCGATATATCGAGCTAATCAAA 1316 Query 959 TCTCACTTCGGCGTTATCAGC-CCGGATGCTCGCTTGCAACGACCCGAGTACCTTGGCGG 1017 ||||||||||||| | || | || || || || | ||||| ||||| ||||| ||||| Sbjct 1317 TCTCACTTCGGCG-TCTCTTCTCCTGACGCACGACTACAACGCCCCGAATACCTCGGCGG 1375 Query 1018 CG 1019 || Sbjct 1376 CG 1377 >seq2 Length=2125 Score = 87.8 bits (96), Expect = 5e-14 Identities = 130/182 (71%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 839 TATGCTGATCTTTCCCAGGCTACCGCTGCAACAATTAATCAGCTCCGGCAGTCGTTTCAG 898 || ||||| | || | ||||| ||||| ||||| || | || || || |||| || Sbjct 1207 TACGCTGACTTATCTGATGCTACTGCTGCTACAATCAACGAACTTCGACAAGCGTTCCAA 1266 Query 899 ATACAGAAGCTTTTAGAAAGGGATGCTCGTGGTGGAACACGATATACAGAGATTGTGCGA 958 |||| || |||||| | || || ||||| ||||| ||||| | ||| || | | Sbjct 1267 GTACAACGCCTCTTAGAACGTGACGCCCGTGGCGGAACTCGATACATCGAGCTTATAAAA 1326 Query 959 TCTCACTTCGGCGTTATCAGC-CCGGATGCTCGCTTGCAACGACCCGAGTACCTTGGCGG 1017 ||||||||||||| | || | || || || || || ||||| ||||| ||||| ||||| Sbjct 1327 TCTCACTTCGGCG-TCTCTTCTCCTGACGCACGATTACAACGCCCCGAATACCTCGGCGG 1385 Query 1018 CG 1019 || Sbjct 1386 CG 1387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14290694962390