Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astrammina_20rara_20[genbank_20GCA_5F000211355.2_202011-04-27] 3,231 sequences; 1,450,095 total letters Query= NC_027642.1 Length=4624 Score E Sequences producing significant alignments: (Bits) Value seq2 96.9 1e-16 seq3 91.5 4e-15 >seq2 Length=2125 Score = 96.9 bits (106), Expect = 1e-16 Identities = 445/702 (63%), Gaps = 17/702 (2%) Strand=Plus/Plus Query 813 TGCTACTGCGGCTACTATTAACCAGCTTCGTCAGGCTTTTCAGATACAGAAGATTTATGA 872 ||||||||| ||||| || ||| | ||||| || || || || |||| | | || Sbjct 1224 TGCTACTGCTGCTACAATCAACGAACTTCGACAAGCGTTCCAAGTACAACGCCTCTTAGA 1283 Query 873 GAGGGATGCCCGTGGAGGTACGCGTTATACGGAGCTTATTCAGGCTCACTTTGGCGTCAC 932 | || |||||||| || || || || | |||||||| | ||||||| |||||| | Sbjct 1284 ACGTGACGCCCGTGGCGGAACTCGATACATCGAGCTTATAAAATCTCACTTCGGCGTCTC 1343 Query 933 TTCTCCTGACGCTCGTTTGCAGCGTGCTGAGTATCTCGGTGGTGGTTCTACTCCCATTAA 992 |||||||||||| || || || || | || || ||||| || || |||| || | || Sbjct 1344 TTCTCCTGACGCACGATTACAACGCCCCGAATACCTCGGCGGCGGCTCTAGCCCGGTAAA 1403 Query 993 TGTTAATCCTATTGCGCAGACGCAAGGTACTGGGGCGTCTGGCACGACTACACCGCAGGG 1052 ||| || | | || ||| | || |||| | | ||||| || || || Sbjct 1404 CATTACCCCGGTAACACA---ACAATCT------GCCTCTGACGCTACTACGCCTCAAGG 1454 Query 1053 TAATCTGGCCGCTATTGGTACTATGTCACATAGAGGCGTCGGTTTTACTAAGTCGTTTAC 1112 || || || | | ||||| | | | | || ||| || | || || || || Sbjct 1455 CAACCTTGCAGGCTTCGGTACAGCCACCCTTCGCGGTCACGGCTTCTCAAAATCCTTCAC 1514 Query 1113 CGAGCATTGTCTGCTAATTGGTTTGTTGGAGGTTACTGCTGATTTGTCTTATCAGCAGGG 1172 ||| || || | | ||||| || | || ||| ||| | | ||||||||||| Sbjct 1515 CGAACACTGCATTATCATTGGCATGGTCTCCGTCCGTGCCGATCTAACCTATCAGCAGGG 1574 Query 1173 TCTTGAACGTATGTGGTCTCGTCAAACGCGGTTTGATTTTTTCTGGCCCGCGTTGGCGCA 1232 ||| | || |||| || ||| ||| || | ||| || | |||||| || | | || Sbjct 1575 CCTTAACCGCATGTTCTCGCGTTCAACACGCTATGACTTCTACTGGCCTGCACTCTCTCA 1634 Query 1233 GATTGGTGAGCAGGCGGTGCTCAATCAAGAGATTTGTATGGTTGGCGGTGCTACGGA-TA 1291 | || || || | | || ||| |||| || | | | ||| ||| || || | Sbjct 1635 CCTGGGCGAACAATCCATACTTAATAAAGAAATCTTTTCTGATGGTTCTGCCACTGACGA 1694 Query 1292 CCCAGATTTGGGGGTATCAGGAGCGTTATGCTGAGTATCGGTATAAGCCGTCTCGTATTT 1351 | | | | || ||||| || || ||||| || || || ||||| || ||| |||| Sbjct 1695 TGCCG-TCTTCGGCTATCAAGAACGCTATGCGGAATACCGCTATAAACCTTCTACTATTA 1753 Query 1352 GCGGTCAGTTTCGG---AGTTCGTATACGGCGCCGTTGGATAGTTGGCATTTGTCGCAAT 1408 | || || ||| | | || || || | | ||| |||||| |||| ||| Sbjct 1754 CCTCTCTCTTCCGGTCCAATGCG---ACCGCTTCACTCGATGCTTGGCACCTGTCCCAAG 1810 Query 1409 ACTTTACGACTCTTCCGGCGCTTAATTCGACTTTTATTCAGGATGCTCCGCCTATTTCGC 1468 |||| | ||||| || || |||||| | | || ||| | || ||| || || Sbjct 1811 ACTTCGCAACTCTACCAGCACTTAATCCTTCATTCATTGAAGACAATCCACCAATCGACA 1870 Query 1469 GGATTGTTGCGGTGCCTTCGCAACCGCAGTTTTTGTTGGATT 1510 | ||||| || || |||||| |||| | ||| | || |||| Sbjct 1871 GAATTGTCGCCGTTCCTTCGGAACCCGACTTTATCTTCGATT 1912 >seq3 Length=2115 Score = 91.5 bits (100), Expect = 4e-15 Identities = 345/536 (64%), Gaps = 19/536 (4%) Strand=Plus/Plus Query 814 GCTACTGCGGCTACTATTAACCAGCTTCGTCAGGCTTTTCAGATACAGAAGATTTAT-GA 872 ||||||||||| || |||||| | || | || || || ||| |||| | | || | || Sbjct 1215 GCTACTGCGGCAACAATTAACGAACTAAGACAAGCGTTCCAGGTACA-ACGCCTTCTAGA 1273 Query 873 GAGGGATGCCCGTGGAGGTACGCGTTATACGGAGCTTATTCAGGCTCACTTTGGCGTCAC 932 | || |||||||| || || || |||| ||||| || | ||||||| |||||| | Sbjct 1274 ACGTGACGCCCGTGGCGGAACTCGATATATCGAGCTAATCAAATCTCACTTCGGCGTCTC 1333 Query 933 TTCTCCTGACGCTCGTTTGCAGCGTGCTGAGTATCTCGGTGGTGGTTCTACTCCCATTAA 992 |||||||||||| || | || || | || || ||||| || || || ||||| | || Sbjct 1334 TTCTCCTGACGCACGACTACAACGCCCCGAATACCTCGGCGGCGGCTCAACTCCGGTAAA 1393 Query 993 TGTTAATCCTATTGCGCAGACGCAAGGTACTGGGGCGTCTGGCACGACTACACCGCAGGG 1052 ||| ||| | | || ||| | || |||| | | || || || || || Sbjct 1394 CATTACTCCGGTAACTCA---ACAATCT------GCCTCTGACGCTACAACGCCTCAAGG 1444 Query 1053 TAATCTGGCCGCTATTGGTACTATGTCACATAGAGGCGTCGGTTTTACTAAGTCGTTTAC 1112 || || || | | ||||| | | | | || ||| ||| | || || ||||| Sbjct 1445 CAACCTTGCAGGCTTCGGTACGGCCACCCTTCGCGGTCACGGCTTTTCAAAATCCTTTAC 1504 Query 1113 CGAGCATTGTCTGCTAATTGGTTTGTTGGAGGTTACTGCTGATTTGTCTTATCAGCAGGG 1172 ||| || || | | ||||| || | || ||| ||| | |||| |||||||| Sbjct 1505 CGAACACTGCATTATCATTGGCATGGTCTCCGTCCGTGCCGATCTAACTTACCAGCAGGG 1564 Query 1173 TCTTGAACGTATGTGGTCTCGTCAAACGCGGTTTGATTTTTTCTGGCCCGCGTTGGCGCA 1232 || | || |||| || ||| ||||| | ||| || | |||||| || | | || Sbjct 1565 CCTAAACCGAATGTTCTCGCGTTCCACGCGCTATGACTTCTACTGGCCTGCACTCTCTCA 1624 Query 1233 GATTGGTGAGCAGGCGGTGCTCAATCAAGAGAT-TTGTATGGTTGGCGGTGCTACGGATA 1291 |||| || || | | || ||| |||| || || | || | ||| |||| || Sbjct 1625 CCTTGGCGAACAATCCATCCTTAATAAAGAAATCTTTTCTGAT----GGTTCTACCAATG 1680 Query 1292 CCCA---GATTTGGGGGTATCAGGAGCGTTATGCTGAGTATCGGTATAAGCCGTCT 1344 | | | | || ||||| || |||||||| || || || ||||| || ||| Sbjct 1681 ACGATGCCGTCTTCGGCTATCAAGAACGTTATGCGGAATACCGCTATAAACCTTCT 1736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14684281052935